Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 3.4e-95 351.7 177 100.0
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 3.6e-57 225.3 175 68.6
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 3.1e-56 222.2 176 69.3
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.1e-56 222.2 177 68.9
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.1e-56 222.2 177 68.9
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 1.9e-53 213.0 176 65.3
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 3.2e-53 212.2 177 66.1
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 5.4e-53 211.5 174 64.4
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 6.0e-52 208.0 177 63.8
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 2.3e-51 206.1 177 62.1
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 3.9e-51 205.3 177 63.3
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 3.9e-51 205.3 177 63.3
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 3.9e-51 205.3 179 64.2
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 5.1e-51 204.9 177 62.1
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 6.6e-51 204.5 177 63.3
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 1.1e-50 203.8 181 61.3
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 1.5e-50 203.4 183 60.7
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 9.6e-50 200.7 177 62.1
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 9.6e-50 200.7 160 64.4
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.2e-49 200.3 176 62.5
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 3.6e-49 198.7 173 61.8
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 6.2e-49 198.0 187 57.2
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 6.2e-49 198.0 176 62.5
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 8.1e-49 197.6 179 61.5
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 8.1e-49 197.6 178 62.4
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 1.8e-48 196.4 175 60.6
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 3.1e-48 195.7 177 58.2
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 3.1e-48 195.7 177 58.2
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 5.2e-48 194.9 177 58.2
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 6.8e-48 194.5 177 58.2
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 8.9e-48 194.1 172 57.0
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 1.5e-47 193.4 128 73.4
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 3.4e-47 192.2 174 60.9
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 3.4e-47 192.2 177 58.2
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 3.4e-47 192.2 179 60.3
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 4.4e-47 191.8 125 73.6
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 9.9e-47 190.7 177 57.1
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 2.2e-46 189.5 180 60.0
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 2.2e-46 189.5 177 61.0
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 4.9e-46 188.3 128 71.1
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 6.4e-46 188.0 127 69.3
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 6.4e-46 188.0 151 64.2
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 8.4e-46 187.6 171 59.1
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.4e-45 186.8 172 59.9
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 1.9e-45 186.4 172 59.9
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 2.4e-45 186.0 183 55.2
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 4.2e-45 185.3 177 56.5
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 5.4e-45 184.9 179 57.5
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 9.3e-45 184.1 204 54.9
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.6e-44 183.3 172 57.0
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 2.1e-44 183.0 174 57.5
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 3.5e-44 182.2 197 53.8
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 3.5e-44 182.2 175 60.0
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 6.0e-44 181.4 167 61.1
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 1.0e-43 180.6 184 57.6
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 1.3e-43 180.3 170 55.9
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.3e-43 179.5 148 61.5
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 3.9e-43 178.7 185 56.8
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 5.1e-43 178.3 225 48.9
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 1.1e-42 177.2 182 56.0
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 2.5e-42 176.0 171 57.3
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 3.3e-42 175.6 173 55.5
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 2.1e-41 172.9 173 55.5
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 2.8e-41 172.6 194 52.6
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 3.6e-41 172.2 173 55.5
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 6.2e-41 171.4 221 48.0
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.4e-40 169.5 138 65.9
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 3.1e-40 169.1 175 55.4
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 1.2e-39 167.2 178 53.9
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 2.0e-39 166.4 174 52.9
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 2.0e-39 166.4 174 52.9
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 3.4e-39 165.6 174 54.0
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 4.4e-39 165.2 129 65.1
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 5.8e-39 164.9 211 47.9
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 9.9e-39 164.1 175 52.6
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.7e-38 163.3 133 68.4
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 2.7e-36 156.0 171 51.5
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 1.0e-35 154.1 161 58.4
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 1.0e-35 154.1 115 67.0
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 1.7e-35 153.3 100 74.0
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 7.3e-34 147.9 100 71.0
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 9.6e-34 147.5 120 60.0
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 2.8e-33 146.0 174 50.6
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 1.8e-32 143.3 171 49.7
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 2.0e-31 139.8 102 63.7
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 2.6e-31 139.4 121 57.9
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 2.2e-30 136.3 104 66.3
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 8.4e-30 134.4 173 48.6
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 6.0e-28 128.3 98 57.1
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 5.1e-27 125.2 127 59.8
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 8.7e-27 124.4 111 67.6
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.1e-24 117.5 112 61.6
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 1.4e-21 107.1 140 47.9
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 3.2e-21 105.9 121 44.6
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 5.5e-21 105.1 98 65.3
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 7.1e-21 104.8 106 58.5
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 2.1e-17 93.2 71 63.4
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 9.0e-16 87.8 50 78.0
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.6e-15 86.3 179 36.9
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 2.6e-15 86.3 109 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 4.5e-15 85.5 126 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.3e-14 84.0 142 38.0
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 4.1e-08 62.4 56 50.0
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 5.3e-08 62.0 118 33.9
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 2.0e-07 60.1 72 41.7
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 2.6e-07 59.7 69 43.5
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 3.4e-07 59.3 72 41.7
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 5.9e-07 58.5 125 31.2
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.0e-06 57.8 101 38.6
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 1.3e-06 57.4 75 38.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.3e-06 57.4 69 44.9
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 2.2e-06 56.6 94 36.2
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 2.9e-06 56.2 84 38.1
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 2.9e-06 56.2 75 40.0
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 3.8e-06 55.8 101 37.6
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 3.8e-06 55.8 102 35.3
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 5.0e-06 55.5 110 34.5
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 5.0e-06 55.5 82 37.8
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 5.0e-06 55.5 82 37.8
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 5.0e-06 55.5 82 37.8
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 5.0e-06 55.5 82 37.8
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 5.0e-06 55.5 94 34.0
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 5.0e-06 55.5 83 37.3
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 6.5e-06 55.1 69 40.6
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 6.5e-06 55.1 80 36.2
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 6.5e-06 55.1 94 34.0
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 6.5e-06 55.1 69 42.0
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 6.5e-06 55.1 108 32.4
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 6.5e-06 55.1 57 45.6
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 6.5e-06 55.1 94 36.2
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 6.5e-06 55.1 82 37.8
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 6.5e-06 55.1 69 42.0
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 8.5e-06 54.7 75 40.0
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 8.5e-06 54.7 84 35.7
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 8.5e-06 54.7 56 44.6


User provided reference genes

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