Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.2e-235 818.1 447 100.0
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 5.0e-188 661.4 447 83.4
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.9e-171 606.3 448 71.4
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.9e-163 579.7 448 73.4
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.5e-163 579.3 463 71.7
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.8e-160 568.2 448 68.8
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 3.9e-156 555.4 449 70.8
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.1e-154 549.7 461 64.2
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.3e-153 546.2 450 67.3
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 4.4e-152 542.0 455 68.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-151 540.4 448 69.2
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.3e-151 540.4 502 59.8
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.9e-151 539.3 448 69.0
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 4.9e-151 538.5 448 65.6
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.1e-149 533.1 449 65.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-149 533.1 459 69.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 6.0e-149 531.6 472 62.3
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 7.8e-149 531.2 448 65.4
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 1.0e-148 530.8 450 65.6
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.0e-148 529.3 450 67.3
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.1e-147 527.3 448 65.6
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.5e-147 526.9 453 65.3
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 4.3e-147 525.4 447 63.8
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 7.3e-147 524.6 447 63.8
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.6e-146 522.3 458 69.0
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.1e-146 521.2 453 64.9
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 6.8e-145 518.1 451 67.8
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 5.8e-144 515.0 450 62.7
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-143 511.9 448 64.5
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.4e-142 510.4 448 63.8
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.4e-142 509.6 448 64.3
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.4e-142 509.6 448 64.3
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 4.1e-142 508.8 452 63.1
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.4e-142 508.4 448 64.3
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 7.1e-142 508.1 452 64.4
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-141 507.3 449 64.4
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.6e-141 506.9 449 62.6
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.6e-141 506.9 448 64.1
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-141 506.5 449 66.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.5e-141 505.8 446 68.2
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.5e-141 505.8 448 64.3
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 4.6e-141 505.4 448 61.6
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 7.8e-141 504.6 454 65.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.0e-140 504.2 448 62.7
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 3.9e-140 502.3 453 62.9
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.1e-139 500.7 451 67.6
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.5e-139 499.6 455 62.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 4.3e-139 498.8 452 61.9
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.6e-138 496.9 454 62.3
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.8e-138 496.1 448 61.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 4.7e-138 495.4 448 66.3
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 8.1e-138 494.6 455 62.2
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.8e-137 493.4 455 61.1
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.8e-137 493.4 455 62.2
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.4e-137 493.0 449 67.3
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.4e-137 493.0 449 66.4
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.4e-137 493.0 449 66.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.1e-137 492.7 439 62.2
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 6.8e-137 491.5 448 61.4
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.5e-136 490.3 459 61.4
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.0e-136 490.0 454 61.9
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 2.0e-136 490.0 448 61.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.6e-136 489.6 452 61.3
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.6e-136 488.0 498 58.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 9.9e-136 487.6 448 61.6
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.3e-135 487.3 448 61.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.9e-135 486.1 448 65.4
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.9e-135 486.1 449 66.6
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 4.9e-135 485.3 452 61.3
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.4e-134 483.0 455 60.9
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.2e-134 482.6 448 61.2
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.2e-134 482.3 441 63.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 4.2e-134 482.3 448 60.5
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 5.4e-134 481.9 451 61.6
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 9.2e-134 481.1 449 58.6
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 5.1e-132 475.3 448 60.5
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.9e-131 473.4 449 65.7
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 5.6e-131 471.9 448 58.7
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.2e-130 470.7 449 62.6
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 4.7e-130 468.8 451 64.3
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.1e-129 467.6 476 57.8
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.4e-129 467.2 442 60.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.8e-129 466.8 448 61.6
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 5.3e-129 465.3 498 56.0
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 9.0e-129 464.5 448 59.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.5e-128 463.8 461 60.7
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.6e-128 463.0 438 60.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 5.8e-128 461.8 461 60.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.7e-127 460.3 448 60.7
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.2e-127 459.9 461 60.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.9e-127 459.5 448 57.4
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 3.8e-127 459.1 461 59.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 4.2e-126 455.7 471 61.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 7.1e-126 454.9 459 59.7
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.7e-125 453.0 439 63.6
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.5e-125 452.6 441 65.3
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.3e-122 444.1 450 61.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.6e-122 442.6 447 62.0
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.2e-122 441.8 447 61.5
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.0e-120 436.8 448 57.4
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.6e-120 436.4 448 57.8
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 7.6e-120 434.9 451 60.8
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 2.7e-117 426.4 440 60.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.4e-113 414.1 452 59.1
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 4.9e-111 405.6 450 58.7
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 3.2e-110 402.9 454 59.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.3e-108 397.5 455 57.8
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 3.0e-108 396.4 451 55.7
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.2e-106 388.7 453 51.9
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 4.5e-104 382.5 384 63.5
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 9.3e-102 374.8 386 56.7
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.0e-100 371.3 392 54.3
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-100 370.5 383 63.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 6.7e-100 368.6 310 70.6
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.8e-98 363.2 319 61.8
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 6.3e-98 362.1 487 47.0
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 5.3e-97 359.0 454 54.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.9e-89 332.0 487 50.1
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.7e-85 320.1 439 48.5
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.4e-84 317.8 444 46.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.3e-82 311.2 510 42.2
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.2e-77 294.7 292 60.6
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.3e-74 284.6 292 57.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 9.4e-70 268.5 219 68.5
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-66 258.1 448 43.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.4e-65 254.6 448 43.8
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.8e-57 227.6 169 68.0
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.3e-52 210.7 262 46.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.3e-52 210.7 262 46.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.4e-51 206.5 134 74.6
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.8e-50 203.8 361 41.3
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.3e-47 194.9 356 39.9
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.2e-32 145.2 471 29.5
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 7.8e-32 142.5 74 90.5
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 4.3e-30 136.7 245 41.6
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.3e-30 136.7 288 37.5
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 4.7e-29 133.3 69 89.9
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.1e-29 132.5 196 44.4
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.3e-28 131.0 244 38.9
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.1e-28 130.6 137 60.6
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.5e-27 128.3 80 76.2
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.1e-25 120.2 68 82.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 6.0e-24 116.3 70 77.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 7.3e-22 109.4 113 48.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.6e-21 107.1 92 65.2
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.2e-19 102.1 81 61.7
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 5.8e-19 99.8 68 66.2
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 5.8e-19 99.8 68 66.2
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 7.6e-19 99.4 447 29.1
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.6e-13 80.5 56 71.4
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 7.6e-11 72.8 95 49.5
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 1.6e-08 65.1 132 36.4
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 1.6e-08 65.1 72 55.6
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 5.6e-06 56.6 59 45.8


User provided reference genes

Program Settings