Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.9e-289 998.4 482 100.0
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 4.0e-215 751.5 472 74.6
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 7.0e-212 740.7 472 73.3
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 5.5e-209 731.1 473 72.5
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 2.0e-203 712.6 484 73.3
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 6.3e-197 691.0 470 72.1
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 6.3e-197 691.0 472 69.7
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 9.5e-193 677.2 472 68.9
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 2.8e-192 675.6 471 69.2
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 4.7e-192 674.9 471 69.2
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 8.0e-192 674.1 473 68.1
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 3.2e-188 662.1 469 68.9
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.7e-187 659.1 473 66.8
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 1.5e-185 653.3 454 70.0
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 2.3e-183 646.0 473 65.3
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 4.0e-183 645.2 474 64.8
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 8.9e-183 644.0 471 65.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.5e-182 643.3 473 64.3
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.5e-182 643.3 475 64.0
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 3.4e-182 642.1 531 63.7
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.4e-182 641.7 473 64.1
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.3e-181 640.2 473 63.2
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 6.4e-181 637.9 500 63.0
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.1e-180 637.1 474 63.9
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 2.7e-179 632.5 471 63.7
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.6e-176 623.2 475 62.9
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 5.2e-175 618.2 477 61.8
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 7.5e-174 614.4 478 63.4
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 3.7e-173 612.1 480 57.3
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 4.9e-173 611.7 478 61.3
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.9e-172 609.8 484 60.1
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 2.4e-172 609.4 471 60.9
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.2e-171 607.1 504 59.9
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.7e-171 605.9 477 60.2
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.6e-171 605.1 525 56.0
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 7.8e-171 604.4 477 61.0
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 6.6e-170 601.3 463 60.9
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 9.5e-169 597.4 472 61.2
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.7e-168 595.1 455 62.9
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 8.1e-168 594.3 484 59.9
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.1e-167 594.0 469 60.8
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 7.8e-163 577.8 474 61.2
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.9e-161 573.2 567 53.6
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 4.3e-161 572.0 480 59.8
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.6e-160 570.1 474 56.3
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 9.0e-159 564.3 376 71.3
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 2.2e-157 559.7 472 58.9
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.1e-155 553.1 397 66.0
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 7.8e-155 551.2 473 56.7
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 6.2e-152 541.6 388 68.0
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 1.5e-150 537.0 474 57.4
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.5e-150 535.4 500 54.6
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 4.5e-150 535.4 474 58.0
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 9.9e-150 534.3 475 55.2
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.7e-149 533.5 511 53.6
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 2.2e-149 533.1 476 54.0
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 1.2e-147 527.3 471 57.7
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.5e-147 525.8 475 54.9
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 4.3e-145 518.8 478 53.6
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 4.3e-145 518.8 475 54.7
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 5.6e-145 518.5 474 54.6
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 7.4e-145 518.1 473 54.8
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 2.8e-144 516.2 471 55.2
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 3.7e-144 515.8 484 53.5
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 3.7e-144 515.8 468 54.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.8e-143 513.5 473 54.5
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 3.4e-142 509.2 484 54.8
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 7.6e-142 508.1 517 52.8
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.9e-140 503.4 474 54.2
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 2.5e-140 503.1 475 51.2
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 5.5e-140 501.9 389 64.5
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.6e-139 500.4 475 54.7
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.6e-139 498.8 434 60.1
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 1.9e-137 493.4 515 50.5
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.3e-136 490.7 406 59.1
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 6.2e-136 488.4 521 49.5
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.4e-135 487.3 457 55.1
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 4.5e-134 482.3 483 50.7
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.5e-133 478.4 511 49.9
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 3.5e-131 472.6 461 52.5
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 9.7e-129 464.5 470 50.9
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 6.9e-127 458.4 521 49.1
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 5.9e-126 455.3 477 49.9
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 6.3e-120 435.3 483 47.4
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 3.8e-117 426.0 342 60.2
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 3.2e-116 422.9 483 47.6
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 7.9e-115 418.3 363 56.5
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 1.4e-111 407.5 479 44.5
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 3.2e-108 396.4 314 61.1
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 4.8e-104 382.5 273 67.0
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.3e-98 363.6 263 65.8
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 5.7e-97 359.0 291 60.8
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 2.2e-96 357.1 290 59.0
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 6.5e-93 345.5 289 56.7
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 2.7e-91 340.1 330 53.6
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.8e-90 337.4 295 58.3
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 7.5e-89 332.0 488 37.1
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.7e-72 277.7 475 34.3
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 3.7e-72 276.6 206 62.6
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 2.0e-70 270.8 186 70.4
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 4.6e-70 269.6 187 67.9
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 9.5e-68 261.9 226 61.5
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.2e-67 261.5 191 64.4
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 8.9e-66 255.4 157 72.0
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.9e-61 240.0 171 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 1.5e-57 228.0 469 33.3
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 2.9e-56 223.8 161 64.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-38 164.1 347 33.4
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.3e-37 161.8 141 56.0
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.3e-35 155.2 191 42.9
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 2.0e-25 121.3 141 45.4
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 2.6e-25 120.9 91 64.8
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 3.8e-24 117.1 86 64.0
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 5.7e-20 103.2 376 26.9
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 3.4e-17 94.0 90 50.0
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.7e-16 91.7 295 27.1
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.9e-16 90.9 53 71.7
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 5.5e-15 86.7 152 36.2
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.1e-14 84.7 99 46.5
QL01p005881 Quercus lobata HOM05D006389 ORTHO05D007863 4.5e-09 67.0 79 46.8
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 1.0e-08 65.9 58 55.2
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.1e-07 62.4 53 52.8
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 4.2e-07 60.5 72 41.7


User provided reference genes

Program Settings