Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 4.1e-281 970.7 474 100.0
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 2.9e-202 708.8 499 72.3
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 1.4e-201 706.4 448 76.6
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 1.6e-200 703.0 485 72.2
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 3.5e-200 701.8 490 71.6
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 2.3e-199 699.1 444 77.5
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 1.5e-198 696.4 510 70.4
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 3.3e-198 695.3 502 69.7
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 5.6e-198 694.5 485 72.2
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 1.8e-196 689.5 488 71.3
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 3.1e-196 688.7 468 75.2
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 3.1e-196 688.7 474 72.6
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 5.8e-195 684.5 485 70.3
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 7.6e-195 684.1 473 71.7
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 3.8e-194 681.8 462 74.5
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 6.5e-194 681.0 468 74.4
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 6.5e-194 681.0 474 72.2
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 1.1e-193 680.2 475 72.6
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 7.1e-193 677.6 464 72.0
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 1.6e-192 676.4 476 73.5
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 1.6e-192 676.4 471 71.8
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 6.0e-192 674.5 412 78.6
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 2.3e-191 672.5 468 72.0
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 3.0e-191 672.2 477 72.5
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 6.7e-191 671.0 485 68.7
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 6.7e-191 671.0 436 74.8
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 1.9e-190 669.5 499 68.5
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 2.5e-190 669.1 417 77.5
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 3.3e-190 668.7 477 72.1
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 5.7e-190 667.9 477 72.1
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.7e-190 667.9 428 75.7
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.7e-190 667.9 428 75.7
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 5.7e-190 667.9 461 73.1
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 7.4e-190 667.5 427 75.2
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.3e-189 666.8 453 73.3
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 1.3e-189 666.8 449 74.4
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.1e-189 666.0 408 78.4
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 2.8e-189 665.6 462 71.2
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 4.8e-189 664.8 482 70.7
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 8.2e-189 664.1 415 76.1
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 8.2e-189 664.1 469 71.0
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 1.1e-188 663.7 458 71.6
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.4e-188 663.3 467 69.8
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 6.9e-188 661.0 462 70.8
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.5e-187 659.8 476 70.4
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 4.5e-187 658.3 412 78.6
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 1.3e-186 656.8 485 67.8
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 8.5e-186 654.1 409 76.3
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 1.9e-185 652.9 495 68.5
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 2.5e-185 652.5 496 69.2
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 4.2e-185 651.7 486 69.1
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.0e-183 647.1 486 67.9
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 2.3e-183 646.0 414 75.8
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 2.3e-183 646.0 414 76.1
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 3.3e-182 642.1 406 76.6
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 4.3e-182 641.7 471 70.1
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 4.3e-182 641.7 469 70.1
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 5.7e-182 641.3 405 76.3
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 9.7e-182 640.6 473 69.3
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.3e-181 640.2 465 70.3
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 2.2e-181 639.4 495 65.9
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 3.7e-181 638.6 431 72.4
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 8.2e-181 637.5 439 71.5
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.8e-180 636.3 426 73.0
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 2.4e-180 636.0 414 74.9
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 4.1e-180 635.2 467 69.8
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 5.3e-180 634.8 421 72.9
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.2e-179 633.6 469 69.7
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 1.5e-179 633.3 474 66.2
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 2.6e-179 632.5 469 67.0
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 7.7e-179 630.9 469 67.2
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 1.3e-178 630.2 465 68.6
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 1.7e-178 629.8 452 69.9
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 2.9e-178 629.0 491 66.8
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 5.0e-178 628.2 476 66.8
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 6.5e-178 627.9 507 64.1
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 1.9e-177 626.3 490 66.9
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 1.9e-177 626.3 490 66.9
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.5e-177 625.9 489 67.3
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 3.2e-177 625.5 424 72.4
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 9.4e-177 624.0 477 67.1
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 9.4e-177 624.0 424 72.4
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 2.1e-176 622.9 425 72.7
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 2.1e-176 622.9 412 73.5
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 3.3e-174 615.5 463 67.8
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 4.4e-174 615.1 464 67.0
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 2.8e-173 612.5 429 70.4
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 1.3e-170 603.6 409 70.9
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 3.6e-168 595.5 436 69.0
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 3.0e-167 592.4 487 62.2
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 9.7e-166 587.4 409 68.0
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 3.7e-165 585.5 385 74.3
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 5.9e-163 578.2 444 64.4
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 7.7e-155 551.2 609 52.7
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 3.8e-154 548.9 359 73.8
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 5.2e-151 538.5 368 71.2
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 2.2e-149 533.1 497 58.8
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 9.8e-142 507.7 401 64.3
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 7.0e-140 501.5 457 58.9
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 8.6e-138 494.6 476 57.1
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 4.0e-135 485.7 510 54.3
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.2e-128 464.2 444 54.1
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 6.4e-125 451.8 345 63.8
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.8e-120 436.4 272 78.7
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 2.8e-120 436.4 436 53.2
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 3.6e-120 436.0 262 80.5
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 5.2e-119 432.2 380 56.8
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 9.9e-118 427.9 458 50.2
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.7e-117 427.2 239 82.8
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 7.1e-108 395.2 276 72.5
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.7e-106 390.6 277 70.4
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 3.1e-103 379.8 251 74.9
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 2.9e-101 373.2 252 71.4
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 7.1e-100 368.6 385 50.6
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 5.6e-97 359.0 438 46.1
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 3.8e-93 346.3 223 74.9
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.4e-92 344.4 393 49.1
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.3e-88 331.3 197 79.2
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 7.9e-83 312.0 537 36.5
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 1.5e-78 297.7 432 41.9
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 5.7e-73 279.3 234 60.3
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 1.6e-72 277.7 203 66.5
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.4e-71 274.6 175 76.0
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.5e-57 228.0 140 76.4
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 3.3e-57 226.9 261 49.4
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 1.5e-54 218.0 216 56.5
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 2.2e-53 214.2 230 53.5
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 8.8e-50 202.2 216 53.7
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 5.2e-42 176.4 118 70.3
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 1.8e-39 167.9 314 34.4
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 5.3e-39 166.4 401 30.4
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 2.0e-38 164.5 331 32.0
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 4.2e-36 156.8 140 60.7
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.4e-34 151.8 94 75.5
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 5.7e-33 146.4 349 31.2
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 9.8e-33 145.6 74 83.8
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 5.9e-30 136.3 405 28.4
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 7.7e-30 136.0 392 29.6
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 4.7e-27 126.7 92 69.6
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.8e-24 117.5 102 54.9
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 4.0e-18 97.1 99 53.5
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 1.2e-17 95.5 104 51.0
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 2.7e-14 84.3 73 57.5
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 3.3e-12 77.4 69 56.5
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 3.1e-10 70.9 137 40.1
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 9.8e-09 65.9 38 81.6
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 2.9e-08 64.3 149 29.5
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 7.0e-07 59.7 31 80.6
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 3.5e-06 57.4 121 33.9
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 4.6e-06 57.0 140 32.9


User provided reference genes

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