Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 8.6e-261 903.3 508 100.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.8e-99 366.3 596 44.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.6e-89 334.3 589 43.0
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.2e-73 281.6 544 41.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.8e-69 267.7 531 39.7
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.8e-62 243.8 512 37.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.8e-61 241.1 517 37.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 7.0e-61 239.2 519 37.8
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.1e-58 231.9 525 35.6
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.8e-53 214.5 497 38.6
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 4.1e-53 213.4 613 36.4
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 5.9e-52 209.5 614 37.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.1e-50 205.3 436 39.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.2e-50 203.8 535 41.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 7.2e-50 202.6 481 38.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 8.0e-49 199.1 379 41.2
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 8.8e-48 195.7 605 32.1
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.4e-47 193.4 541 35.9
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.7e-46 191.4 431 35.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 7.0e-45 186.0 470 34.5
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.8e-43 180.3 377 36.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 6.5e-43 179.5 344 39.0
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-42 178.3 577 32.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.5e-42 176.4 388 37.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 9.4e-42 175.6 382 35.9
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 3.0e-40 170.6 348 39.1
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 4.0e-40 170.2 408 36.5
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 5.2e-40 169.9 365 37.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.8e-39 165.6 415 33.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.2e-38 164.5 358 38.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 8.3e-38 162.5 507 34.7
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-37 161.8 535 32.1
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 5.4e-37 159.8 526 31.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 5.4e-37 159.8 407 33.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 7.0e-37 159.5 437 33.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.2e-36 158.7 396 36.4
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.6e-36 158.3 391 34.0
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.5e-36 157.1 509 29.9
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.9e-36 156.4 535 31.6
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.7e-36 156.0 651 28.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-35 154.8 487 32.9
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.9e-35 154.1 658 28.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-34 152.1 487 32.9
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-34 152.1 487 32.9
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 3.3e-34 150.6 685 30.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.6e-34 149.8 374 34.8
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 8.0e-33 146.0 365 37.5
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.0e-32 143.7 524 31.3
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 4.0e-32 143.7 621 29.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.0e-31 141.4 361 34.9
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.4e-31 140.6 476 33.2
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 3.4e-31 140.6 459 32.9
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 5.7e-31 139.8 674 29.4
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.2e-30 137.9 425 32.9
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.9e-30 137.5 476 33.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.9e-30 136.7 483 31.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 8.3e-30 136.0 467 28.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.4e-29 135.2 392 32.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.8e-29 134.8 369 34.4
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 5.4e-29 133.3 536 28.9
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 7.0e-29 132.9 496 30.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.6e-28 131.7 449 29.8
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.9e-28 129.8 221 41.2
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 5.9e-28 129.8 464 31.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 7.8e-28 129.4 495 31.3
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.9e-27 127.5 376 33.2
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.9e-27 127.5 300 34.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 5.0e-27 126.7 217 45.6
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 6.6e-27 126.3 471 31.0
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.6e-27 126.3 489 29.4
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.1e-26 125.6 386 31.1
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.5e-26 125.2 348 32.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.5e-26 125.2 520 31.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.9e-26 124.8 465 31.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.5e-26 124.4 392 30.9
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.3e-26 124.0 230 40.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.3e-26 123.6 217 44.7
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 4.3e-26 123.6 304 35.9
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.6e-26 123.2 532 29.9
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 5.6e-26 123.2 231 41.1
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.2e-25 122.1 367 31.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.8e-25 120.9 496 29.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.6e-25 120.6 587 25.7
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 6.2e-25 119.8 528 27.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 8.0e-25 119.4 533 28.7
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.0e-24 119.0 660 27.6
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.8e-24 118.2 481 29.9
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.8e-24 118.2 358 33.2
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-24 117.9 605 29.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 5.2e-24 116.7 505 29.7
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.9e-24 115.9 602 29.6
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-23 115.5 415 32.3
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-23 115.5 489 29.0
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.2e-23 115.5 452 29.4
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.2e-23 115.5 293 36.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 2.6e-23 114.4 488 28.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.4e-23 114.0 438 28.1
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.5e-23 112.8 488 27.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.3e-22 112.1 448 28.6
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-22 111.3 272 37.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.9e-22 110.9 311 32.8
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 6.4e-22 109.8 247 36.8
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 8.3e-22 109.4 524 26.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-21 109.0 486 29.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.4e-21 108.6 336 31.2
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.9e-21 108.2 443 30.2
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 1.9e-21 108.2 228 33.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.2e-21 107.5 309 33.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.4e-21 106.7 301 31.6
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 5.4e-21 106.7 405 28.9
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 7.0e-21 106.3 319 33.2
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 7.0e-21 106.3 470 28.9
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 7.0e-21 106.3 224 38.4
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 9.2e-21 105.9 223 40.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.3e-19 102.1 340 32.1
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.7e-19 101.7 219 38.4
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.3e-19 101.3 511 27.4
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.0e-19 100.9 188 44.1
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.3e-18 97.1 509 27.3
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 7.3e-18 96.3 312 31.1
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 7.3e-18 96.3 183 43.2
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.2e-17 95.5 183 43.2
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.2e-17 95.5 310 29.4
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-17 95.1 503 28.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-17 95.1 520 26.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.6e-17 95.1 164 45.1
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.1e-17 94.7 523 26.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 2.1e-17 94.7 223 40.8
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 3.6e-17 94.0 505 27.3
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.6e-17 94.0 166 39.8
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 4.7e-17 93.6 164 44.5
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 6.2e-17 93.2 184 39.7
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.4e-16 92.0 314 29.0
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 4.0e-16 90.5 222 38.3
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.0e-15 88.2 548 26.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.9e-14 83.6 526 24.7
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.4e-13 82.0 409 27.6
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.2e-13 80.9 473 27.3
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.2e-12 79.0 345 29.6
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.1e-12 78.2 402 25.9
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.7e-12 77.8 313 29.1
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 2.7e-12 77.8 204 35.3
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 4.6e-12 77.0 304 29.9
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.0e-12 76.6 278 29.9
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.3e-11 75.5 184 37.0
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.3e-11 74.7 92 48.9
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 2.3e-11 74.7 277 31.4
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.1e-10 72.4 327 27.5
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.9e-10 71.6 81 49.4
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.5e-10 71.2 81 49.4
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-10 71.2 455 25.3
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.5e-10 71.2 81 49.4
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 2.5e-10 71.2 258 32.2
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 3.3e-10 70.9 137 39.4
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 5.6e-10 70.1 81 48.1
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 5.6e-10 70.1 204 34.8
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 9.5e-10 69.3 81 48.1
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.6e-09 68.6 253 32.0
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.2e-09 66.6 487 26.7
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.2e-09 66.6 491 26.7
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 1.4e-08 65.5 362 25.7
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.4e-08 65.5 166 33.7
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.1e-08 64.3 86 45.3
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 8.9e-08 62.8 170 34.1
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.2e-07 62.4 288 27.4
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 2.0e-07 61.6 65 50.8
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.0e-07 61.6 230 32.6
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 2.0e-07 61.6 107 37.4
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 2.0e-07 61.6 65 43.1
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 4.4e-07 60.5 112 33.0
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 4.4e-07 60.5 112 33.0
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 4.4e-07 60.5 112 33.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 5.8e-07 60.1 112 33.0
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 5.8e-07 60.1 302 24.5
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 9.9e-07 59.3 428 25.7
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.3e-06 58.9 215 29.8
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 2.9e-06 57.8 158 35.4
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 2.9e-06 57.8 121 30.6
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 3.7e-06 57.4 180 28.9
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 3.7e-06 57.4 121 32.2
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 3.7e-06 57.4 93 38.7
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.9e-06 57.0 118 33.9
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.9e-06 57.0 198 31.3
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 6.4e-06 56.6 297 25.3
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 8.4e-06 56.2 93 38.7
Zm00001eb044080 Zea mays HOM05D036983 ORTHO05D037006 8.4e-06 56.2 163 33.1


User provided reference genes

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