Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 3.5e-74 281.6 144 100.0
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 5.2e-70 267.7 144 93.8
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 4.4e-69 264.6 144 92.4
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 8.3e-68 260.4 144 91.7
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.1e-67 260.0 142 90.1
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 1.1e-67 260.0 142 90.1
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.8e-67 259.2 144 91.0
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 1.8e-67 259.2 144 91.0
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 2.4e-67 258.8 144 89.6
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 2.0e-66 255.8 142 88.0
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 4.5e-66 254.6 144 89.6
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 4.5e-66 254.6 157 84.7
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 7.7e-66 253.8 144 89.6
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 1.0e-65 253.4 144 88.9
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.3e-65 253.1 146 90.4
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 1.3e-65 253.1 142 89.4
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.3e-65 253.1 145 90.3
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 1.7e-65 252.7 145 90.3
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 5.0e-65 251.1 142 89.4
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 6.5e-65 250.8 145 89.7
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 1.1e-64 250.0 145 87.6
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 1.1e-64 250.0 143 89.5
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 1.1e-64 250.0 140 89.3
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 1.9e-64 249.2 146 91.1
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 2.5e-64 248.8 144 87.5
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.5e-64 248.8 145 89.0
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 2.5e-64 248.8 145 89.0
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 3.3e-64 248.4 144 88.9
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 3.3e-64 248.4 144 91.0
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 5.5e-64 247.7 144 86.1
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 7.2e-64 247.3 144 86.8
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 9.5e-64 246.9 144 86.8
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 1.2e-63 246.5 146 87.0
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 1.6e-63 246.1 134 93.3
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 1.6e-63 246.1 146 86.3
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 1.6e-63 246.1 145 86.2
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 2.1e-63 245.7 144 88.2
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 2.8e-63 245.4 144 86.8
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 3.6e-63 245.0 144 88.2
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 8.0e-63 243.8 145 86.2
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 8.0e-63 243.8 144 87.5
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 8.0e-63 243.8 144 87.5
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 1.4e-62 243.0 145 85.5
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.4e-62 243.0 141 87.9
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 1.4e-62 243.0 144 86.8
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 1.8e-62 242.7 145 85.5
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 1.8e-62 242.7 145 86.2
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 2.3e-62 242.3 145 85.5
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.3e-62 242.3 132 90.9
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.3e-62 242.3 144 86.8
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 2.3e-62 242.3 141 87.9
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 3.0e-62 241.9 144 88.2
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 4.0e-62 241.5 132 93.2
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 4.0e-62 241.5 145 84.8
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 5.2e-62 241.1 145 84.1
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 6.8e-62 240.7 145 84.1
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 1.2e-61 240.0 145 84.1
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.2e-61 240.0 145 84.8
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 1.5e-61 239.6 144 84.7
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 2.0e-61 239.2 145 84.1
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 2.0e-61 239.2 145 84.8
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 2.6e-61 238.8 145 84.1
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 3.4e-61 238.4 145 84.8
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 3.4e-61 238.4 145 84.1
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 5.7e-61 237.7 145 82.8
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 1.3e-60 236.5 145 86.2
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.3e-60 236.5 130 90.0
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 1.7e-60 236.1 145 83.4
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 2.2e-60 235.7 145 84.1
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 3.7e-60 235.0 145 85.5
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 6.3e-60 234.2 145 82.8
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 6.3e-60 234.2 130 90.0
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 8.3e-60 233.8 145 82.1
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 82.1
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 82.1
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 82.1
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 82.1
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 82.1
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 3.1e-59 231.9 145 82.1
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.1e-59 231.9 146 83.6
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 3.1e-59 231.9 144 83.3
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.4e-59 231.1 145 81.4
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 7.0e-59 230.7 142 85.2
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 1.6e-58 229.6 146 84.2
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 4.5e-58 228.0 201 63.7
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 4.5e-58 228.0 146 83.6
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 4.5e-58 228.0 145 83.4
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 1.0e-57 226.9 123 91.1
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 1.0e-57 226.9 146 84.9
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 82.8
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.7e-57 226.1 146 86.3
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 2.9e-57 225.3 146 84.2
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 5.0e-57 224.6 146 83.6
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 6.6e-57 224.2 146 82.9
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 1.1e-56 223.4 146 82.9
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 1.1e-56 223.4 146 81.5
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 3.3e-56 221.9 144 81.2
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 7.3e-56 220.7 145 80.7
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 7.3e-56 220.7 145 80.7
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 1.2e-55 219.9 146 79.5
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.2e-55 219.9 144 79.2
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.6e-55 219.5 142 81.7
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 2.1e-55 219.2 148 79.7
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 2.1e-55 219.2 144 79.9
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 2.1e-55 219.2 145 84.1
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 3.6e-55 218.4 147 81.0
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 4.7e-55 218.0 144 79.2
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 6.1e-55 217.6 145 82.8
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 6.1e-55 217.6 145 82.8
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 8.0e-55 217.2 144 79.9
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.0e-54 216.9 145 80.0
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 1.4e-54 216.5 145 82.8
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.4e-54 216.5 145 80.7
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 1.8e-54 216.1 144 80.6
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.3e-54 215.7 143 81.1
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 5.2e-54 214.5 142 80.3
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.3e-52 209.9 146 78.8
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 2.2e-52 209.1 136 82.4
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 6.4e-52 207.6 129 87.6
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 6.4e-52 207.6 182 68.7
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 4.1e-51 204.9 144 79.2
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 5.4e-51 204.5 150 77.3
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 1.6e-50 203.0 152 75.7
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.0e-50 202.6 144 76.4
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 3.5e-50 201.8 144 77.8
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 4.6e-50 201.4 147 76.2
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 3.0e-49 198.7 143 75.5
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 3.0e-49 198.7 133 79.7
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 6.6e-49 197.6 145 75.9
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 6.6e-49 197.6 145 75.9
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 6.6e-49 197.6 145 75.9
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 4.3e-48 194.9 145 72.4
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 5.6e-48 194.5 144 75.0
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 1.2e-47 193.4 169 68.0
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 2.8e-47 192.2 120 84.2
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 8.0e-47 190.7 144 75.7
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 6.8e-46 187.6 144 74.3
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 1.2e-45 186.8 142 74.6
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.5e-45 186.4 144 73.6
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 7.5e-45 184.1 123 79.7
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 9.8e-45 183.7 145 73.8
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.9e-44 182.2 133 75.2
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.4e-43 179.9 115 83.5
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 1.2e-42 176.8 132 72.0
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 1.6e-42 176.4 133 76.7
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 1.6e-42 176.4 122 82.0
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 2.1e-42 176.0 138 73.2
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 2.7e-42 175.6 145 67.6
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 4.6e-42 174.9 122 82.0
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 4.6e-42 174.9 95 88.4
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 4.6e-42 174.9 135 74.8
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.3e-41 172.6 135 74.8
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.3e-41 172.6 124 78.2
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 5.0e-41 171.4 146 68.5
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 1.1e-38 163.7 91 87.9
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 2.0e-37 159.5 111 76.6
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 3.4e-37 158.7 142 64.8
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 9.9e-37 157.1 98 84.7
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.3e-36 156.8 113 77.9
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.7e-36 156.4 142 61.3
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 1.4e-35 153.3 103 80.6
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 2.4e-35 152.5 122 73.8
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 5.6e-32 141.4 82 81.7
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 7.6e-29 131.0 136 59.6
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.3e-28 130.2 106 76.4
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.2e-28 129.4 119 64.7
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.2e-28 129.4 119 64.7
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 3.8e-28 128.6 134 59.7
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.4e-27 125.9 80 82.5
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 4.1e-27 125.2 144 56.9
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 1.2e-26 123.6 76 84.2
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 1.2e-26 123.6 77 83.1
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 2.1e-26 122.9 99 73.7
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 7.8e-26 120.9 69 82.6
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 3.0e-25 119.0 64 89.1
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 8.7e-25 117.5 132 56.1
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 1.5e-24 116.7 132 53.8
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 1.3e-20 103.6 81 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 8.4e-20 100.9 98 59.2
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 1.9e-16 89.7 76 69.7
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.3e-09 66.2 35 94.3


User provided reference genes

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