Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 6.1e-163 577.4 289 100.0
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 4.2e-111 405.2 279 72.8
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 1.6e-110 403.3 282 70.9
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 3.9e-101 372.1 295 62.7
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 8.7e-101 370.9 286 66.4
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 3.3e-100 369.0 286 66.1
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 3.7e-99 365.5 257 70.0
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.8e-98 363.2 280 64.6
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.5e-97 360.1 278 64.7
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.0e-97 359.8 285 64.9
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 3.4e-97 359.0 282 63.5
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 4.5e-97 358.6 282 63.5
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.5e-97 358.6 281 64.4
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 5.8e-97 358.2 280 64.3
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.0e-96 357.5 279 65.2
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-96 357.5 279 65.2
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.3e-96 357.1 258 68.2
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-96 357.1 279 64.9
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.7e-96 356.7 278 64.0
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.2e-96 356.3 291 61.9
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 3.8e-96 355.5 288 61.8
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.4e-96 354.4 279 64.5
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.1e-95 354.0 284 64.1
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-95 353.2 279 64.5
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 2.5e-95 352.8 265 64.2
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 3.2e-95 352.4 279 62.4
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.2e-94 350.5 276 63.0
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.7e-94 349.4 281 63.0
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.6e-94 348.6 285 62.1
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.9e-94 347.8 281 63.3
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.3e-93 346.3 249 66.3
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.9e-93 345.5 292 60.3
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.1e-93 345.1 251 67.7
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 4.3e-92 342.0 226 72.1
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 7.4e-92 341.3 284 59.5
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 2.8e-91 339.3 288 60.8
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 4.8e-91 338.6 292 60.3
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 6.3e-91 338.2 269 64.3
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.4e-90 337.0 274 62.8
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 4.1e-90 335.5 274 62.4
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 2.6e-89 332.8 264 60.6
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 4.5e-89 332.0 278 58.6
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 5.0e-88 328.6 259 63.7
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 8.5e-88 327.8 265 61.9
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 4.2e-87 325.5 283 59.4
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 5.5e-87 325.1 254 64.6
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 5.5e-87 325.1 254 64.6
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 5.5e-87 325.1 254 64.6
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 7.2e-87 324.7 258 61.6
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 7.2e-87 324.7 338 51.8
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 9.4e-87 324.3 291 56.7
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.2e-86 323.9 251 62.2
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 2.7e-86 322.8 270 60.7
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 3.6e-86 322.4 258 62.0
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 4.6e-86 322.0 265 63.0
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 1.0e-85 320.9 270 61.5
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.0e-85 320.9 270 58.9
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.4e-85 320.5 274 61.3
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 3.9e-85 318.9 270 61.9
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 5.1e-85 318.5 249 63.1
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 6.7e-85 318.2 266 59.0
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.5e-84 317.0 255 64.3
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.5e-84 317.0 278 58.6
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 2.0e-84 316.6 284 57.7
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 2.5e-84 316.2 254 63.0
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 4.3e-84 315.5 280 57.9
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 5.7e-84 315.1 263 58.6
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 7.4e-84 314.7 269 58.7
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.7e-83 313.5 238 64.3
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 1.7e-83 313.5 280 55.7
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.8e-83 312.0 289 56.1
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 6.3e-83 311.6 301 55.1
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.8e-82 310.1 264 61.0
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 4.1e-82 308.9 301 54.5
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 4.1e-82 308.9 280 55.0
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 5.3e-82 308.5 266 60.2
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 5.3e-82 308.5 266 60.2
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 9.1e-82 307.8 281 54.8
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 4.5e-81 305.4 261 59.0
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 5.9e-81 305.1 280 55.0
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 7.7e-81 304.7 284 55.6
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 2.2e-80 303.1 243 60.1
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 3.8e-80 302.4 239 61.5
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 1.1e-79 300.8 283 52.7
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.5e-79 299.7 290 54.5
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 9.4e-79 297.7 258 56.2
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.2e-78 297.4 270 54.8
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.5e-76 290.4 259 56.4
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 9.7e-76 287.7 312 50.3
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 3.1e-74 282.7 218 64.7
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 2.0e-73 280.0 261 54.8
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.6e-70 270.4 228 62.3
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.4e-69 267.3 230 59.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.4e-69 267.3 233 54.9
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.7e-69 265.0 281 52.3
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 9.7e-68 261.2 214 57.5
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 4.8e-67 258.8 227 59.0
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 5.9e-65 251.9 239 51.0
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.9e-63 246.9 289 49.1
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 8.0e-62 241.5 197 56.3
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 4.8e-59 232.3 280 47.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 8.3e-59 231.5 297 46.5
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.5e-57 225.7 255 48.2
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.0e-45 188.0 245 42.9
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 6.8e-45 185.3 190 46.3
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.2e-43 180.3 265 40.0
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.1e-38 163.7 241 40.2
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 6.8e-37 158.7 115 67.8
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.5e-33 146.4 168 49.4
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-32 144.8 166 48.8
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 8.6e-32 141.7 249 34.1
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.1e-31 141.4 101 59.4
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.1e-31 141.4 101 59.4
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.9e-31 140.6 266 32.7
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.8e-29 134.0 145 52.4
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 4.0e-29 132.9 93 72.0
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.5e-28 131.0 106 63.2
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.9e-26 124.0 243 32.9
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.5e-20 104.4 143 44.8
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 5.8e-20 102.4 242 32.2
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 9.9e-20 101.7 72 65.3
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 1.3e-19 101.3 74 66.2
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 1.1e-18 98.2 248 29.4
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.4e-18 97.8 276 27.2
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-18 97.4 103 49.5
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 2.3e-16 90.5 137 38.7
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.2e-14 84.7 65 64.6
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.7e-11 74.3 50 70.0
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.8e-11 73.2 57 61.4
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 7.1e-10 68.9 43 72.1


User provided reference genes

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