Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 3.5e-153 545.0 302 100.0
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.8e-109 399.8 297 70.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.5e-103 380.2 303 69.3
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 5.7e-103 378.3 303 69.0
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.0e-99 367.5 282 73.4
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.8e-99 365.5 282 73.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.8e-99 365.5 282 73.4
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.1e-98 364.0 305 69.8
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.2e-95 354.0 298 64.4
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.4e-95 352.4 303 68.6
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.3e-94 350.5 299 64.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.2e-94 349.7 304 68.4
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.8e-93 346.7 302 65.9
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.9e-91 339.3 305 63.0
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.5e-90 336.3 304 64.8
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.2e-90 334.7 263 72.2
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.6e-89 332.4 293 62.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 4.0e-88 328.9 303 63.7
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.2e-88 328.6 304 61.8
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.7e-87 325.1 303 60.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.7e-86 323.6 299 59.9
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.2e-86 323.2 305 60.3
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.9e-86 322.0 290 62.8
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.8e-85 320.1 280 64.3
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.8e-85 320.1 297 60.6
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 7.7e-84 314.7 299 64.5
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.3e-83 313.9 302 61.3
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.9e-83 312.8 302 61.9
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 5.0e-83 312.0 303 59.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.1e-82 310.8 297 66.0
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.9e-82 310.1 303 59.1
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 9.5e-82 307.8 310 61.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.2e-81 307.4 293 59.7
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-81 307.4 251 64.9
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.8e-80 303.5 313 59.1
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.3e-80 303.1 266 67.3
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 3.0e-80 302.8 289 59.2
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 4.0e-80 302.4 287 59.2
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 4.0e-80 302.4 265 65.3
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.2e-79 300.8 285 60.7
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.5e-79 298.1 302 59.9
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.3e-78 297.4 263 61.2
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 2.9e-78 296.2 293 59.4
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 6.4e-78 295.0 266 64.7
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.8e-77 293.5 303 58.7
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.8e-77 293.5 305 57.4
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 3.2e-77 292.7 295 56.3
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 3.2e-77 292.7 289 57.1
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 9.2e-77 291.2 282 59.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 9.2e-77 291.2 283 59.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.0e-76 290.0 283 59.4
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 2.7e-76 289.7 283 59.0
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.6e-76 288.9 291 59.1
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 4.6e-76 288.9 306 56.2
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.8e-76 288.1 263 60.8
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.0e-75 287.7 263 60.8
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.3e-75 287.3 286 55.2
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.3e-75 287.3 252 65.1
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.3e-75 286.6 287 58.9
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.9e-75 286.2 300 57.7
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 6.6e-75 285.0 301 56.5
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.6e-75 285.0 252 61.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 8.6e-75 284.6 303 56.4
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.5e-74 283.9 292 56.5
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 3.3e-74 282.7 301 55.8
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 4.3e-74 282.3 301 56.5
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 7.3e-74 281.6 287 56.8
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.3e-74 281.6 297 58.6
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 7.3e-74 281.6 302 54.6
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 7.3e-74 281.6 299 54.8
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 7.3e-74 281.6 299 54.8
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 7.3e-74 281.6 298 54.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-73 280.8 300 55.3
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.2e-73 280.8 288 58.7
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.2e-73 280.8 294 61.6
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.1e-73 280.0 295 54.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 2.8e-73 279.6 288 57.3
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 3.6e-73 279.3 264 59.5
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 3.6e-73 279.3 265 59.6
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.7e-73 278.9 259 60.2
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 6.2e-73 278.5 296 54.4
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.0e-73 278.1 295 58.3
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.0e-73 278.1 259 59.8
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.8e-72 276.9 298 55.0
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.8e-72 276.9 259 59.5
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.3e-72 276.6 299 55.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.3e-72 276.6 312 54.5
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.1e-72 276.2 259 59.5
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 4.0e-72 275.8 286 58.4
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 5.2e-72 275.4 237 65.0
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 8.9e-72 274.6 288 56.6
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.0e-71 273.5 302 54.6
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 3.4e-71 272.7 282 56.7
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.8e-71 271.9 304 55.3
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.5e-71 271.6 287 55.4
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 9.8e-71 271.2 293 54.6
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.3e-70 270.8 286 51.4
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 2.2e-70 270.0 269 58.7
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.9e-70 269.6 297 53.5
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 3.7e-70 269.2 294 50.7
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.1e-69 267.7 265 59.2
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.1e-69 267.7 301 53.5
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.1e-69 267.7 301 53.5
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.1e-69 267.7 301 53.5
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-69 267.3 303 55.1
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 2.4e-69 266.5 298 56.7
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.2e-69 266.2 278 61.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 9.2e-69 264.6 311 54.0
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 9.2e-69 264.6 269 58.0
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 4.6e-68 262.3 282 54.6
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.0e-67 261.2 294 54.8
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-67 261.2 308 51.3
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.5e-66 257.3 241 63.9
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.5e-66 256.5 271 53.9
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.6e-65 253.8 301 54.8
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.7e-65 252.3 291 57.0
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 8.1e-65 251.5 297 50.8
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 8.1e-65 251.5 296 56.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 1.4e-64 250.8 293 53.6
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.4e-63 246.1 284 56.3
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.7e-62 242.7 285 55.1
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 4.1e-61 239.2 297 54.2
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.9e-59 232.6 293 52.2
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 5.1e-59 232.3 298 49.7
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 5.1e-59 232.3 256 57.8
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.9e-58 230.3 298 49.3
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.6e-58 228.8 191 62.3
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 4.7e-57 225.7 295 51.9
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 8.1e-57 224.9 302 49.7
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.1e-56 224.6 276 48.9
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.0e-55 220.3 285 48.1
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.6e-52 210.7 200 59.0
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 6.0e-52 208.8 216 56.9
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.8e-52 208.4 290 48.6
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.3e-51 207.6 261 47.5
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.7e-51 207.2 281 50.2
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.8e-48 197.2 269 43.5
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.7e-46 190.7 250 48.0
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.1e-45 188.0 170 69.4
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.1e-45 188.0 170 69.4
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.2e-45 186.0 151 64.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 1.6e-44 184.1 169 65.7
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.3e-43 181.0 287 44.3
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 5.6e-42 175.6 290 45.9
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.1e-40 169.9 271 40.6
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.0e-40 169.5 143 65.7
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 9.0e-40 168.3 147 57.1
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-38 164.1 175 58.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 8.4e-38 161.8 312 40.1
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 4.2e-37 159.5 152 59.9
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-36 157.9 189 54.5
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.6e-36 157.5 134 60.4
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.0e-35 154.8 244 47.1
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 3.0e-35 153.3 243 39.1
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.9e-35 152.9 188 53.7
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.9e-35 152.9 157 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 8.7e-35 151.8 318 35.8
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 2.5e-34 150.2 289 39.1
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.6e-33 147.5 291 38.1
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 8.1e-33 145.2 267 37.1
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 3.8e-30 136.3 138 52.9
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 4.6e-28 129.4 212 39.2
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.2e-25 119.0 153 51.0
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-24 117.9 93 66.7
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 5.8e-23 112.5 203 39.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.9e-22 110.2 287 35.2
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.2e-21 106.7 154 48.7
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.0e-19 101.7 72 69.4
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.3e-19 101.3 89 69.7
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.9e-18 97.4 108 52.8
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.6e-17 94.4 101 55.4
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.8e-17 92.8 112 53.6
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-16 91.7 94 57.4
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.8e-16 90.9 92 56.5
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 6.5e-14 82.4 273 29.3
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.1e-10 71.6 48 70.8
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.1e-10 71.6 282 28.7
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 6.3e-09 65.9 60 55.0
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.0e-07 60.8 62 53.2
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 2.0e-07 60.8 59 57.6
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 4.5e-07 59.7 103 41.7
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 3.8e-06 56.6 43 62.8


User provided reference genes

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