Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 6.7e-241 837.0 448 100.0
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 6.9e-137 491.5 438 63.5
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 6.4e-135 485.0 434 61.1
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 3.0e-132 476.1 437 64.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 2.5e-131 473.0 439 59.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.3e-130 470.7 437 60.0
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.6e-130 470.3 441 60.3
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 4.8e-130 468.8 439 59.5
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 6.9e-129 464.9 435 59.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.9e-125 451.4 437 58.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 2.3e-124 449.9 435 57.0
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.5e-123 446.4 435 56.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.6e-122 443.7 437 58.1
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.4e-121 440.7 451 55.4
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.9e-120 434.5 434 56.7
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 2.2e-119 433.3 468 53.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.2e-119 433.3 489 53.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 2.9e-119 433.0 445 56.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.3e-116 423.3 463 54.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 9.6e-115 417.9 436 54.4
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 1.1e-113 414.5 456 54.2
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.5e-112 410.6 515 47.8
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 3.4e-112 409.5 460 52.2
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 4.9e-111 405.6 445 53.5
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 2.1e-109 400.2 468 50.0
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 3.5e-109 399.4 436 54.6
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.3e-108 396.7 442 54.3
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.3e-108 396.7 434 54.1
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 2.3e-108 396.7 472 49.4
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 1.9e-107 393.7 469 49.5
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.5e-107 393.3 437 51.3
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 2.5e-107 393.3 437 51.3
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.5e-107 393.3 478 48.1
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.8e-106 389.8 478 51.3
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.8e-106 389.8 475 48.6
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 3.7e-106 389.4 524 45.6
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 8.2e-106 388.3 461 49.5
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 5.3e-105 385.6 469 50.3
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.6e-104 383.3 503 45.5
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.3e-103 380.9 464 49.1
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 3.8e-103 379.4 468 47.4
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 8.5e-103 378.3 571 44.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.2e-101 374.4 443 50.6
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.6e-101 372.9 452 49.1
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 2.0e-99 367.1 543 43.5
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.3e-98 364.4 528 43.6
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 6.3e-98 362.1 459 49.2
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 6.3e-98 362.1 420 51.7
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.4e-97 360.1 448 48.4
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 3.1e-97 359.8 432 49.8
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.2e-96 357.8 466 47.9
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 3.4e-96 356.3 491 45.8
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.3e-95 354.4 456 48.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 6.5e-95 352.1 559 42.0
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 8.5e-95 351.7 591 41.5
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.4e-94 350.9 467 48.0
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.4e-94 350.9 467 48.0
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 4.2e-94 349.4 455 49.0
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 4.2e-94 349.4 448 48.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 4.2e-94 349.4 513 44.6
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 5.5e-94 349.0 448 48.4
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.2e-93 347.8 475 50.3
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.6e-93 346.3 481 45.7
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.0e-92 344.7 452 47.3
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.8e-92 344.0 432 46.3
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 3.9e-92 342.8 451 45.7
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 5.1e-92 342.4 567 40.4
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 6.7e-92 342.0 601 39.6
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 8.8e-92 341.7 489 45.8
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 3.3e-91 339.7 419 48.0
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 4.4e-91 339.3 440 46.4
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 2.8e-90 336.7 600 38.7
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.8e-90 336.7 447 47.9
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 4.8e-90 335.9 468 44.7
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.1e-89 333.2 455 46.6
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 3.1e-89 333.2 446 45.7
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 5.3e-89 332.4 505 44.2
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 9.1e-89 331.6 490 45.3
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.0e-87 328.2 448 45.8
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.3e-87 327.8 452 44.5
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.3e-87 327.8 442 44.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.2e-87 327.0 498 43.4
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.9e-87 326.6 455 46.2
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.9e-87 326.6 457 47.0
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 5.0e-87 325.9 633 37.4
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 8.5e-87 325.1 445 46.1
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-86 324.7 449 45.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 8.0e-85 318.5 442 43.4
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.0e-83 313.9 433 46.7
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.3e-82 311.2 560 38.6
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.8e-81 307.4 452 43.4
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 2.4e-81 307.0 560 38.6
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 2.0e-80 303.9 513 43.3
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.0e-80 303.9 427 45.4
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 3.2e-78 296.6 743 32.3
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.2e-77 294.7 578 36.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 3.4e-75 286.6 505 38.2
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.1e-73 279.6 646 33.6
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 8.0e-69 265.4 210 65.7
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 5.9e-64 249.2 412 40.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 1.0e-63 248.4 245 56.7
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.9e-52 208.8 425 35.1
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.4e-50 202.6 425 34.1
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.3e-47 194.1 124 76.6
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 9.5e-46 188.7 289 42.6
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-45 187.2 424 33.5
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.6e-45 186.8 146 67.1
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 2.3e-44 184.1 483 32.7
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 5.2e-44 183.0 123 77.2
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.1e-41 175.3 121 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.2e-41 173.7 454 31.9
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 3.5e-40 170.2 577 27.9
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 7.3e-38 162.5 119 67.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.6e-37 161.4 93 87.1
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 1.3e-31 141.7 111 67.6
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-31 141.0 211 43.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-30 138.7 121 60.3
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.2e-27 128.6 100 63.0
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 7.1e-25 119.4 325 32.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 2.7e-24 117.5 121 45.5
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 2.8e-21 107.5 80 65.0
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 3.9e-15 87.0 124 45.2
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 4.3e-14 83.6 87 49.4
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.8e-12 78.2 44 75.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.4e-12 77.8 114 41.2
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 9.0e-12 75.9 79 55.7
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.5e-11 75.1 75 56.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.4e-11 73.9 49 73.5
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 5.8e-11 73.2 48 75.0
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.3e-10 72.0 44 72.7
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.6e-08 65.1 122 37.7
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.6e-08 65.1 122 37.7
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 6.0e-08 63.2 74 48.6
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.0e-08 63.2 73 45.2
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.0e-07 62.4 56 60.7
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.8e-07 61.6 89 39.3
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.0e-07 60.8 133 33.1
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 5.1e-07 60.1 83 45.8
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 5.1e-07 60.1 83 45.8
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 7.4e-06 56.2 57 52.6


User provided reference genes

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