Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 3229.5 1762 100.0
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1855.9 1959 60.0
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1825.4 1813 63.3
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1786.2 1811 62.4
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1764.6 1803 61.6
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1735.7 1839 59.0
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1731.1 1803 61.3
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1712.6 1803 60.0
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1709.1 1645 64.7
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1686.0 1816 59.1
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1672.5 1801 59.3
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1660.6 1816 58.9
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1642.5 1758 57.3
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1610.9 1828 55.8
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1605.5 1825 57.7
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1580.8 1819 56.3
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1561.6 1596 62.2
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1549.6 1812 54.7
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1543.9 1778 56.4
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1536.5 1823 56.1
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1528.5 1810 54.8
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1526.1 1805 55.6
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1518.4 1805 55.0
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1517.7 1820 56.5
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1516.5 1804 55.1
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1514.2 1420 65.6
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1506.5 1814 55.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1505.3 1814 55.5
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1505.0 1814 55.4
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1502.6 1814 55.1
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1496.5 1808 54.8
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1496.1 1818 53.9
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1495.3 1814 53.7
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1486.9 1810 54.3
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1484.9 1813 55.3
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1473.8 1816 54.0
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1463.7 1803 54.7
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1461.8 1817 54.2
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1455.3 1806 53.8
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1454.9 1818 53.7
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1449.5 1809 52.6
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1435.2 1816 52.4
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1433.7 1809 53.7
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1413.7 1429 62.6
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1410.2 1685 55.8
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1399.0 1209 69.9
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1392.1 1836 52.0
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1374.8 1795 51.1
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1368.6 1796 52.5
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1364.7 1212 68.8
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1360.5 1804 51.7
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1347.4 1819 51.4
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1327.8 1823 50.2
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1327.4 1826 50.5
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1323.9 1835 50.0
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1323.5 1587 53.9
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1319.7 1822 50.2
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1301.6 1800 48.2
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1299.6 1309 64.7
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1295.4 1831 50.2
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1291.2 1814 50.7
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1286.6 1830 49.0
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1256.1 1789 48.1
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1241.5 1786 47.9
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1231.1 1466 54.7
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1223.8 1469 55.6
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1221.8 1824 46.6
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 0.0e+00 1185.2 1339 57.6
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1162.9 1254 60.2
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1154.4 1263 60.3
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1151.0 1254 59.2
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1144.8 962 68.8
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1137.1 1553 51.8
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1127.1 1243 58.2
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 2.7e-293 1013.1 1777 43.4
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 7.8e-293 1011.5 948 64.7
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 4.7e-282 975.7 1035 62.9
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 4.0e-281 972.6 1598 45.7
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 7.8e-277 958.4 1555 45.5
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 8.1e-274 948.3 839 65.9
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 3.0e-244 850.1 1117 51.4
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.3e-228 798.1 1463 43.1
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 6.3e-218 762.7 1330 44.5
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 3.0e-180 637.5 775 57.0
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 4.6e-160 570.5 833 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 7.1e-153 546.6 962 41.2
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.0e-151 541.2 545 59.4
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 3.9e-143 514.2 507 61.9
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.3e-142 511.1 818 42.9
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 3.9e-127 461.1 1144 34.0
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.8e-92 345.9 672 40.3
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 7.0e-92 344.0 837 36.0
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 3.9e-58 231.9 599 33.4
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 5.6e-57 228.0 213 61.0
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 7.3e-57 227.6 220 60.0
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.6e-51 209.9 242 51.2
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 6.6e-50 204.5 208 54.8
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.9e-45 189.1 171 58.5
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.4e-45 188.0 170 62.4
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 5.4e-44 184.9 201 55.2
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 2.8e-40 172.6 148 60.8
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-37 162.2 281 38.8
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.0e-34 154.1 133 70.7
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.4e-30 139.0 286 37.4
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-25 121.3 109 59.6
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 6.2e-24 118.2 114 54.4
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.2e-22 114.0 1358 21.8
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.8e-21 109.0 194 41.8
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 2.1e-19 103.2 155 45.8
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.2e-16 91.7 59 72.9
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-13 81.6 61 57.4
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 7.1e-12 78.2 78 50.0
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 2.3e-10 73.2 239 27.2
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 3.0e-10 72.8 83 41.0
Actinidia09210 Actinidia chinensis HOM05D001674 ORTHO05D008599 5.3e-07 62.0 196 32.7
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 7.6e-06 58.2 91 48.4


User provided reference genes

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