Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 3.3e-30 136.0 202 100.0
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 1.9e-25 120.2 202 93.1
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.4e-25 119.8 63 92.1
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 7.1e-25 118.2 64 89.1
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 1.2e-24 117.5 62 90.3
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 1.6e-24 117.1 64 89.1
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 1.6e-24 117.1 63 90.5
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 1.6e-24 117.1 63 90.5
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 1.6e-24 117.1 64 89.1
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 2.1e-24 116.7 63 90.5
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.1e-24 116.7 62 90.3
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 2.1e-24 116.7 62 90.3
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 2.1e-24 116.7 62 90.3
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 2.7e-24 116.3 63 87.3
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 2.7e-24 116.3 64 89.1
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 2.7e-24 116.3 63 90.5
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 2.7e-24 116.3 62 90.3
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 2.7e-24 116.3 62 90.3
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 3.5e-24 115.9 62 88.7
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 3.5e-24 115.9 63 88.9
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 4.6e-24 115.5 63 88.9
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 4.6e-24 115.5 61 90.2
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 6.0e-24 115.2 64 87.5
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.0e-24 115.2 62 88.7
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 6.0e-24 115.2 63 90.5
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.9e-24 114.8 63 88.9
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.9e-24 114.8 63 88.9
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 7.9e-24 114.8 63 88.9
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 7.9e-24 114.8 61 90.2
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.0e-23 114.4 62 91.9
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.0e-23 114.4 62 91.9
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.0e-23 114.4 63 88.9
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 1.0e-23 114.4 63 88.9
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 1.0e-23 114.4 63 87.3
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 1.0e-23 114.4 63 85.7
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 1.3e-23 114.0 62 87.1
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 1.3e-23 114.0 64 87.5
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.8e-23 113.6 61 88.5
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.8e-23 113.6 61 88.5
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 1.8e-23 113.6 63 87.3
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.8e-23 113.6 63 88.9
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.8e-23 113.6 63 87.3
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.8e-23 113.6 63 87.3
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 3.0e-23 112.8 63 85.7
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 3.9e-23 112.5 63 85.7
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 5.1e-23 112.1 63 85.7
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.1e-23 112.1 63 84.1
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.1e-23 112.1 63 84.1
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 5.1e-23 112.1 63 84.1
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 5.1e-23 112.1 62 87.1
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 5.1e-23 112.1 62 87.1
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 5.1e-23 112.1 63 87.3
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 6.7e-23 111.7 63 84.1
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.7e-23 111.7 62 83.9
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.7e-23 111.7 62 83.9
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 6.7e-23 111.7 63 85.7
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 6.7e-23 111.7 63 85.7
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.1e-22 110.9 63 85.7
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.1e-22 110.9 63 85.7
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.1e-22 110.9 63 85.7
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 1.1e-22 110.9 201 89.6
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 1.5e-22 110.5 63 85.7
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.5e-22 110.5 63 85.7
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.5e-22 110.5 64 82.8
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.5e-22 110.5 63 84.1
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 1.9e-22 110.2 62 88.7
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 1.9e-22 110.2 63 81.0
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 1.9e-22 110.2 63 84.1
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 1.9e-22 110.2 61 83.6
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 4.3e-22 109.0 63 84.1
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.3e-22 109.0 63 82.5
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 4.3e-22 109.0 64 81.2
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 7.4e-22 108.2 60 85.0
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 7.4e-22 108.2 64 81.2
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 9.6e-22 107.8 62 82.3
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 9.6e-22 107.8 63 82.5
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 1.6e-21 107.1 63 81.0
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 2.8e-21 106.3 63 81.0
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 3.7e-21 105.9 60 85.0
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 3.7e-21 105.9 61 80.3
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 3.7e-21 105.9 61 78.7
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 3.7e-21 105.9 61 80.3
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 4.8e-21 105.5 63 79.4
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 4.8e-21 105.5 63 84.1
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 6.2e-21 105.1 61 78.7
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 8.1e-21 104.8 60 83.3
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 8.1e-21 104.8 60 83.3
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 8.1e-21 104.8 60 83.3
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 8.1e-21 104.8 60 83.3
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 8.1e-21 104.8 60 83.3
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 8.1e-21 104.8 60 83.3
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 8.1e-21 104.8 61 82.0
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 1.4e-20 104.0 60 83.3
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 1.4e-20 104.0 60 83.3
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 1.4e-20 104.0 60 83.3
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 1.8e-20 103.6 60 81.7
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 2.4e-20 103.2 60 81.7
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 2.4e-20 103.2 60 81.7
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 3.1e-20 102.8 60 81.7
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.3e-20 102.1 70 74.3
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.2e-19 100.9 63 69.8
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 1.5e-19 100.5 60 81.7
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 5.8e-19 98.6 60 80.0
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 1.3e-18 97.4 60 78.3
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.7e-18 97.1 63 74.6
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 1.7e-18 97.1 63 74.6
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 2.2e-18 96.7 60 78.3
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 6.5e-18 95.1 60 76.7
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 8.4e-18 94.7 66 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.2e-16 90.9 61 65.6
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 5.1e-15 85.5 55 72.7
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 9.6e-14 81.3 61 60.7
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 1.4e-12 77.4 41 85.4
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 1.4e-12 77.4 60 56.7
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.1e-09 67.8 39 82.1
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 1.1e-09 67.8 39 82.1
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 2.5e-09 66.6 59 47.5
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 3.2e-09 66.2 62 50.0
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.6e-08 63.9 60 45.0
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 2.1e-08 63.5 62 46.8
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 4.6e-08 62.4 62 45.2
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 7.9e-08 61.6 31 93.5
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 5.1e-07 58.9 62 43.5
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 1.1e-06 57.8 60 41.7
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 4.3e-06 55.8 33 78.8


User provided reference genes

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