Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1731.8 1008 100.0
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1312.0 949 79.2
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1258.0 951 72.5
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1221.8 946 69.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1218.0 947 70.2
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1213.4 947 70.2
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1202.2 951 73.8
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1198.7 960 68.4
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1191.4 948 73.2
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1190.3 950 73.3
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1168.7 951 72.2
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1166.8 1039 63.7
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1164.4 951 71.8
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1162.1 941 73.8
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1146.3 948 65.2
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1143.3 960 68.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1142.1 948 65.9
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1141.3 949 65.9
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1141.3 947 68.2
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1134.0 955 68.9
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1130.5 969 64.4
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1130.2 951 70.0
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1128.2 949 66.7
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1125.5 943 67.7
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1125.5 955 70.3
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1124.8 951 70.6
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1123.2 948 69.9
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1122.1 948 70.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1115.1 946 70.5
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1112.1 951 64.9
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1109.4 989 67.5
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1107.4 951 65.3
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1107.4 956 69.1
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1106.7 959 64.1
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1105.1 944 64.7
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1104.4 948 63.4
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 0.0e+00 1104.0 949 70.4
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1103.2 950 65.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1102.4 955 68.0
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1100.9 916 65.9
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1100.1 968 63.3
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1099.7 949 63.1
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1098.6 955 67.7
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1097.0 955 67.9
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 956 67.3
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1090.1 945 67.8
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1089.7 958 69.2
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1087.4 955 64.2
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1086.6 967 63.0
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1085.5 964 63.6
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1085.1 965 68.6
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1084.7 970 65.2
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1081.2 949 60.5
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1080.1 949 68.8
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1075.5 950 68.2
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.4e-311 1072.8 950 68.2
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 4.8e-311 1071.2 946 64.2
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.4e-310 1069.7 946 63.8
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 4.0e-310 1068.1 984 61.7
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 3.4e-309 1065.1 989 60.8
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 2.9e-308 1062.0 990 61.7
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 3.7e-308 1061.6 946 62.5
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 3.2e-307 1058.5 968 65.9
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 4.6e-306 1054.7 952 67.6
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 2.5e-304 1048.9 956 62.6
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 3.3e-304 1048.5 949 67.1
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 2.1e-303 1045.8 876 63.0
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 5.2e-302 1041.2 955 62.5
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 4.9e-300 1034.6 953 60.0
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 4.9e-300 1034.6 981 59.9
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 3.5e-298 1028.5 961 65.9
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 2.8e-295 1018.8 985 58.7
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 6.8e-294 1014.2 946 60.7
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 5.8e-293 1011.1 974 58.8
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.9e-292 1008.8 972 58.4
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 6.4e-292 1007.7 987 57.8
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 6.2e-287 991.1 945 61.3
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 7.3e-280 967.6 958 57.5
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 2.2e-276 956.1 809 65.6
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.4e-275 953.4 944 56.2
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 1.2e-274 950.3 947 57.2
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 5.1e-273 944.9 948 61.3
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.4e-270 936.0 949 62.3
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.4e-270 936.0 949 62.3
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 2.6e-269 932.6 950 62.3
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 3.2e-267 925.6 947 61.5
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 5.1e-265 918.3 955 60.0
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 6.2e-263 911.4 946 54.7
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 3.8e-260 902.1 950 59.4
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 4.9e-260 901.7 946 60.0
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 6.5e-260 901.4 947 60.4
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 8.4e-260 901.0 946 60.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.1e-259 900.6 944 60.5
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 3.2e-259 899.0 947 60.3
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 7.1e-259 897.9 947 60.3
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 9.3e-259 897.5 963 54.8
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.8e-257 893.3 944 60.3
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 8.2e-255 884.4 963 58.0
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 2.5e-243 846.3 989 51.7
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 1.3e-223 780.8 740 57.3
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 2.7e-221 773.1 973 50.8
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.8e-217 760.4 771 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 8.4e-183 645.2 878 47.7
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.1e-174 618.2 954 46.2
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 6.6e-172 609.0 595 62.2
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 6.4e-167 592.4 809 50.4
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.5e-136 491.5 557 48.3
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.2e-135 487.6 454 59.0
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.0e-128 464.5 501 54.3
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 8.5e-127 459.1 824 37.5
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 3.7e-90 337.4 361 54.8
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.0e-87 329.3 860 31.4
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 1.7e-87 328.6 858 31.5
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 4.3e-70 270.8 538 37.9
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 5.6e-62 243.8 847 25.3
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.8e-52 212.2 172 63.4
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 2.2e-50 205.3 258 48.4
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 8.4e-50 203.4 259 49.4
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.2e-24 119.8 67 80.6
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 2.7e-24 118.6 77 75.3
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.3e-21 109.8 90 58.9
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.6e-21 109.4 90 58.9
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 2.9e-18 98.6 123 50.4
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 3.8e-18 98.2 66 74.2
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 1.1e-17 96.7 90 56.7
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.4e-17 96.3 90 56.7
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 9.4e-17 93.6 154 39.0
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.9e-10 72.0 35 94.3
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.9e-10 72.0 174 36.8
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 8.5e-10 70.5 196 33.2
MBI15_g28715_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.4e-07 63.2 39 76.9
MBI15_g26777_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.5e-06 59.7 40 72.5


User provided reference genes

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