Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 9.9e-130 466.8 245 100.0
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 3.3e-93 345.5 245 74.3
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 5.7e-93 344.7 247 74.5
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.3e-92 343.6 247 74.5
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.2e-92 342.8 247 74.5
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 4.8e-92 341.7 247 74.9
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-91 340.5 247 74.1
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-91 340.5 247 73.7
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.1e-91 340.5 246 73.6
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.4e-91 339.3 245 73.9
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 5.3e-91 338.2 239 74.9
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.5e-90 336.7 245 73.5
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.8e-89 332.0 247 73.7
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.8e-89 332.0 247 73.7
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 5.5e-88 328.2 246 72.0
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 3.7e-84 315.5 245 68.6
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.0e-81 307.4 245 68.2
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 3.2e-80 302.4 249 65.9
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 5.5e-80 301.6 250 66.8
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 7.2e-80 301.2 250 67.2
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.9e-78 295.4 247 64.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 6.7e-78 294.7 235 69.4
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 8.8e-78 294.3 253 64.4
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.1e-77 293.9 250 67.2
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.5e-77 293.5 252 65.5
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.4e-77 292.0 236 68.2
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.4e-77 292.0 253 65.6
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 4.4e-77 292.0 252 65.1
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 7.4e-77 291.2 236 67.4
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.3e-76 290.4 249 65.5
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.8e-76 289.3 233 67.4
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 2.8e-76 289.3 254 64.6
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 3.7e-76 288.9 250 64.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 3.7e-76 288.9 245 64.5
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 3.7e-76 288.9 250 64.4
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 3.7e-76 288.9 236 68.2
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 6.3e-76 288.1 255 63.5
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 8.2e-76 287.7 253 63.6
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 8.2e-76 287.7 244 63.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.1e-75 287.3 252 64.3
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.1e-75 287.3 237 66.2
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.4e-75 287.0 231 68.4
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.8e-75 286.6 251 64.9
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.8e-75 286.6 249 64.7
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 4.1e-75 285.4 245 63.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 7.0e-75 284.6 253 60.5
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 7.0e-75 284.6 248 64.5
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 9.1e-75 284.3 247 64.0
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.2e-74 283.9 242 65.3
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 2.6e-74 282.7 249 61.8
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 3.5e-74 282.3 253 60.5
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 3.5e-74 282.3 249 63.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 4.5e-74 282.0 251 60.2
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 4.5e-74 282.0 244 61.1
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.9e-74 281.6 243 64.2
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.9e-74 281.6 238 65.1
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.3e-73 280.4 252 61.9
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.7e-73 280.0 246 62.2
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.7e-73 280.0 234 66.7
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 5.0e-73 278.5 254 58.7
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 6.5e-73 278.1 252 62.3
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 6.5e-73 278.1 246 62.2
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 8.5e-73 277.7 254 59.4
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-72 277.3 182 77.5
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.9e-72 276.6 236 65.3
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 5.5e-72 275.0 243 63.8
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 5.5e-72 275.0 254 58.7
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 2.7e-71 272.7 255 61.2
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 8.0e-71 271.2 254 59.4
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.3e-70 269.6 247 58.7
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 4.0e-70 268.9 249 59.8
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 8.8e-70 267.7 245 61.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 8.8e-70 267.7 242 63.2
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.2e-69 267.3 246 61.0
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.5e-69 266.9 244 63.1
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.6e-69 266.2 251 60.6
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 3.3e-69 265.8 248 59.3
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 3.3e-69 265.8 248 59.3
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 5.7e-69 265.0 232 65.9
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 7.5e-69 264.6 244 63.5
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 7.5e-69 264.6 247 59.1
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.3e-68 263.8 254 57.9
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 1.3e-68 263.8 239 62.3
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.3e-68 263.8 243 60.9
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 1.7e-68 263.5 249 58.6
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 3.7e-68 262.3 236 61.9
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 6.3e-68 261.5 256 59.8
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 6.3e-68 261.5 255 59.6
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.1e-67 260.8 252 57.9
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 7.0e-67 258.1 244 61.1
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 9.1e-67 257.7 236 62.7
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.2e-66 257.3 236 62.7
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 5.9e-66 255.0 233 63.5
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.5e-64 250.4 250 57.6
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 4.2e-64 248.8 247 55.9
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 7.2e-64 248.1 242 58.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 4.0e-62 242.3 241 58.5
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.2e-61 240.7 255 54.5
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.5e-61 240.4 238 58.8
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 3.7e-60 235.7 249 55.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 4.1e-59 232.3 239 58.2
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 5.4e-59 231.9 258 53.9
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.6e-58 230.3 246 51.2
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.0e-57 227.6 233 56.7
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 1.4e-54 217.2 250 51.6
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.5e-53 213.8 253 51.4
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 3.4e-53 212.6 194 61.3
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 9.8e-53 211.1 250 51.2
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 3.7e-52 209.1 250 50.8
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 3.7e-52 209.1 250 50.8
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 3.5e-50 202.6 131 77.9
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 5.9e-50 201.8 251 47.8
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 3.0e-46 189.5 215 56.3
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.8e-43 180.3 184 57.6
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 4.9e-36 155.6 124 61.3
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 8.6e-33 144.8 131 58.8
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 9.9e-29 131.3 231 41.1
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.2e-26 124.4 75 84.0
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 2.1e-23 113.6 227 35.7
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 2.8e-23 113.2 173 41.6
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.7e-23 112.5 148 46.6
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 3.1e-22 109.8 142 48.6
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 8.9e-22 108.2 79 75.9
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.6e-18 97.4 95 53.7
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 1.2e-15 87.8 137 44.5
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 4.7e-15 85.9 100 49.0
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.1e-11 74.7 62 56.5
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 4.2e-11 72.8 121 40.5
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 4.3e-08 62.8 73 47.9
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 9.6e-08 61.6 70 50.0
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 9.0e-06 55.1 54 57.4


User provided reference genes

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