Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 0.0e+00 1218.4 628 100.0
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 8.4e-258 893.6 667 71.8
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.8e-255 885.9 667 69.7
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 4.5e-251 871.3 664 65.7
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 8.4e-250 867.1 667 65.8
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 2.4e-249 865.5 669 70.0
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 6.0e-248 860.9 666 69.4
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 6.7e-247 857.4 663 68.5
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 4.3e-246 854.7 656 67.2
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 7.4e-246 854.0 678 65.3
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 1.7e-242 842.8 667 65.7
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.5e-242 840.9 635 70.6
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 8.4e-242 840.5 663 67.4
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 4.2e-241 838.2 667 64.5
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.1e-240 835.9 663 67.3
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 2.7e-240 835.5 663 66.5
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 3.5e-240 835.1 667 66.3
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 7.4e-238 827.4 666 64.9
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 6.3e-237 824.3 663 64.6
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 1.1e-236 823.5 665 64.7
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 9.0e-236 820.5 673 66.6
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.2e-235 820.1 673 66.4
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-235 819.7 662 64.2
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.7e-234 816.2 663 64.3
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 3.6e-232 808.5 679 60.5
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 3.6e-232 808.5 679 60.5
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 7.9e-232 807.4 669 62.8
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 4.5e-227 791.6 662 63.1
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.8e-226 788.5 665 61.1
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.6e-224 783.1 639 63.8
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 2.7e-224 782.3 669 60.4
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 3.9e-223 778.5 667 63.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.3e-221 773.5 665 63.0
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 2.2e-221 772.7 672 62.8
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 1.1e-220 770.4 667 62.5
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.9e-220 767.7 663 62.9
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 4.5e-219 765.0 672 62.2
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.3e-218 763.5 666 62.0
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 1.1e-217 760.4 663 62.1
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 7.2e-217 757.7 675 61.6
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 3.6e-216 755.4 663 61.7
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 3.0e-215 752.3 666 59.3
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 5.2e-215 751.5 666 60.8
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 8.8e-215 750.7 673 59.6
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.1e-214 750.4 667 61.3
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 3.3e-214 748.8 922 47.0
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 4.4e-214 748.4 667 61.3
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 4.4e-214 748.4 667 61.3
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.7e-213 746.5 667 61.3
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 2.8e-213 745.7 764 54.8
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 4.8e-213 745.0 671 58.9
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.8e-212 743.0 691 57.5
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.1e-212 742.3 636 61.3
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 9.1e-212 740.7 679 59.9
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 1.6e-211 740.0 671 58.6
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 5.9e-211 738.0 659 60.2
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 2.2e-210 736.1 665 59.7
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 1.2e-208 730.3 665 60.0
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 5.2e-207 724.9 662 58.0
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 2.6e-206 722.6 585 63.4
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 9.7e-206 720.7 662 58.3
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 1.3e-205 720.3 673 56.9
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.2e-205 719.5 668 57.0
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 1.8e-204 716.5 639 61.2
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 7.7e-203 711.1 668 56.0
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 7.2e-201 704.5 660 58.5
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 8.0e-200 701.0 668 54.9
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 4.8e-197 691.8 663 57.8
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 5.4e-196 688.3 662 56.0
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 1.6e-195 686.8 662 56.0
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 3.5e-195 685.6 662 57.9
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 7.7e-195 684.5 667 55.2
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 1.7e-194 683.3 667 58.9
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 2.5e-193 679.5 664 58.0
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 3.3e-193 679.1 659 56.4
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 4.2e-193 678.7 665 56.7
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 5.5e-193 678.3 662 56.8
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 1.6e-192 676.8 648 55.7
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 2.8e-192 676.0 662 55.9
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 8.0e-192 674.5 663 56.9
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 1.4e-191 673.7 663 56.4
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 1.8e-191 673.3 744 49.1
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 2.3e-191 672.9 663 56.4
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 2.3e-191 672.9 636 56.0
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.2e-190 670.6 664 55.6
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 5.9e-187 658.3 670 54.6
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 1.3e-186 657.1 663 55.5
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.9e-186 656.0 668 54.2
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 8.6e-186 654.4 676 54.0
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 4.1e-180 635.6 492 65.9
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.2e-176 624.0 661 50.5
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 8.9e-175 617.8 658 50.3
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 6.4e-173 611.7 657 49.3
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 4.6e-171 605.5 671 48.7
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.0e-170 604.4 687 52.0
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 2.2e-165 586.6 682 48.4
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 2.1e-163 580.1 659 48.0
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 7.8e-155 551.6 624 48.4
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.7e-154 550.4 629 47.1
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 8.4e-149 531.6 524 53.6
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 4.2e-148 529.3 666 44.7
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 7.1e-148 528.5 533 54.6
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 6.0e-139 498.8 718 41.5
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 2.4e-135 486.9 670 42.4
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.6e-118 430.3 532 46.1
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 6.8e-90 335.9 537 41.5
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 8.8e-90 335.5 369 52.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 3.7e-80 303.5 721 32.0
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 6.3e-80 302.8 299 55.9
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.0e-61 242.3 669 29.6
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 6.2e-59 233.0 657 26.9
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.2e-54 218.8 374 39.6
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 5.2e-42 176.8 162 56.2
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.6e-37 159.8 166 54.2
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 7.6e-33 146.4 99 84.8
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 2.4e-31 141.4 480 27.5
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.1e-26 125.9 99 64.6
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 4.2e-23 114.0 126 50.0
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.9e-20 105.1 136 46.3
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.8e-18 98.6 58 75.9
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.8e-18 98.6 52 86.5
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 2.9e-16 91.3 87 51.7
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 3.2e-15 87.8 295 32.2
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 6.7e-13 80.1 56 69.6
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 6.9e-10 70.1 56 55.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 7.6e-09 66.6 69 50.7
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 8.4e-08 63.2 81 48.1


User provided reference genes

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