Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 3.5e-162 575.1 331 100.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.6e-109 399.4 293 71.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.8e-105 386.7 305 67.5
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.4e-104 381.3 286 67.5
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.4e-104 381.3 286 67.8
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.3e-103 380.6 290 66.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.2e-101 374.0 253 73.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 3.2e-99 365.9 276 68.1
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.2e-98 364.0 287 66.6
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.3e-97 360.5 273 67.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 3.9e-97 359.0 279 64.2
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.3e-96 355.5 282 63.5
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.3e-96 355.5 280 64.3
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.3e-95 354.0 300 59.7
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.6e-95 353.6 287 64.5
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.8e-95 352.8 273 65.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.2e-95 351.3 284 64.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 8.2e-95 351.3 271 66.4
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.1e-94 350.9 291 62.9
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 4.1e-94 349.0 278 63.7
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 6.9e-94 348.2 284 62.7
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 9.0e-94 347.8 274 63.5
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.5e-93 347.1 286 61.5
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.2e-92 343.2 254 65.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.9e-92 342.8 286 61.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 3.8e-92 342.4 284 61.3
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.0e-92 342.0 273 64.1
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.2e-91 339.3 273 63.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.2e-90 337.4 285 61.4
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.2e-90 337.4 262 64.1
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.6e-90 335.5 253 64.4
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 7.9e-90 334.7 273 62.3
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.0e-89 334.3 257 65.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.0e-89 332.8 283 59.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 3.9e-89 332.4 286 60.8
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.9e-89 332.4 263 62.0
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.7e-89 331.6 253 63.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.3e-88 329.3 291 56.7
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 4.3e-88 328.9 254 62.6
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 7.4e-88 328.2 275 59.6
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.7e-87 327.0 274 60.6
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-86 324.3 258 64.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.4e-86 323.9 287 57.8
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-86 323.6 278 59.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 3.1e-86 322.8 289 57.1
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.2e-85 320.9 293 56.3
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.8e-84 315.8 253 59.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 8.5e-84 314.7 270 59.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.2e-83 312.8 251 60.2
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.5e-83 312.0 269 58.7
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 5.5e-83 312.0 282 58.5
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.7e-82 308.9 327 50.5
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 7.9e-82 308.1 297 53.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.9e-81 305.8 257 60.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.9e-81 305.8 287 54.7
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 6.7e-81 305.1 255 60.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.8e-81 304.7 266 57.1
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 8.8e-81 304.7 266 59.0
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 8.8e-81 304.7 305 51.8
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.0e-80 303.5 249 59.4
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 3.3e-80 302.8 251 58.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 4.4e-80 302.4 263 58.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 2.4e-78 296.6 251 57.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.1e-78 295.8 254 60.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 7.0e-78 295.0 273 53.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 9.1e-78 294.7 274 54.4
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 5.9e-77 292.0 248 59.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.7e-77 291.6 424 42.2
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.9e-76 289.7 286 54.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.9e-76 289.7 270 55.2
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.8e-76 289.3 274 53.6
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 5.0e-76 288.9 259 59.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.5e-76 288.5 270 53.3
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.1e-75 287.7 273 56.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.5e-75 287.3 293 51.9
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.5e-75 287.3 309 49.8
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.2e-75 285.8 274 52.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 5.5e-75 285.4 243 56.4
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 9.4e-75 284.6 280 51.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.1e-74 283.5 277 51.3
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 3.6e-74 282.7 274 55.5
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 4.7e-74 282.3 276 52.2
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.0e-74 281.6 277 51.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.4e-73 280.8 274 51.8
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.3e-73 280.0 238 55.5
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 3.0e-73 279.6 181 74.6
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.0e-73 279.6 250 55.6
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 6.7e-73 278.5 269 51.3
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.0e-72 276.9 277 50.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.6e-72 276.6 288 49.3
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 4.8e-71 272.3 285 48.8
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-69 266.5 274 51.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 7.7e-69 265.0 291 49.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-68 264.6 346 44.2
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.2e-67 259.2 287 49.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 4.2e-67 259.2 341 44.0
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.2e-67 258.5 251 49.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 9.4e-67 258.1 251 49.8
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.0e-65 254.6 247 48.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.2e-64 251.1 256 49.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-64 251.1 256 49.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.2e-64 251.1 247 47.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.2e-64 251.1 247 47.4
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.5e-64 250.8 256 49.6
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.8e-63 245.7 220 59.5
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 8.3e-63 245.0 252 49.6
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.4e-62 244.2 256 48.8
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-61 240.7 291 45.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.0e-61 240.4 210 58.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.7e-61 240.0 274 47.1
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 9.5e-59 231.5 282 42.2
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.1e-58 228.8 174 64.4
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 5.2e-57 225.7 209 55.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 7.5e-56 221.9 174 63.2
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.9e-55 219.2 255 44.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.8e-54 217.2 246 50.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.0e-53 213.8 206 54.4
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.6e-50 204.1 140 72.9
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.9e-47 192.6 181 60.8
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.0e-44 182.6 259 42.9
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.9e-43 180.6 175 55.4
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.7e-42 176.0 238 42.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.0e-40 170.6 172 51.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.5e-40 168.7 183 50.3
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.7e-39 167.5 255 38.0
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 4.9e-39 166.0 195 47.2
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 5.4e-38 162.5 343 32.9
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 6.0e-37 159.1 103 69.9
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.0e-36 156.0 124 59.7
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.6e-34 149.8 467 28.3
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 6.2e-34 149.1 163 47.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.1e-33 146.7 127 56.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.7e-31 139.8 167 44.9
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-26 124.0 218 37.6
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 4.7e-26 122.9 244 32.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.7e-26 122.9 183 39.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.1e-25 120.2 194 38.1
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 3.1e-25 120.2 285 29.5
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.2e-25 119.4 261 33.7
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.5e-24 117.9 293 29.4
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.3e-23 114.8 86 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.1e-22 111.7 260 29.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.3e-20 104.0 109 49.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 4.3e-19 99.8 139 38.8
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.4e-17 94.7 139 37.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.4e-17 94.7 139 37.4
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.4e-17 94.0 65 69.2
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 6.4e-15 85.9 65 63.1
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 8.4e-15 85.5 232 28.4
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 1.1e-14 85.1 117 43.6
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.4e-14 84.7 61 63.9
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.4e-14 82.8 61 67.2
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.3e-12 78.2 110 38.2
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 6.6e-12 75.9 139 30.2
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.5e-11 74.7 101 37.6
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.3e-10 71.6 38 84.2
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 8.1e-10 68.9 259 27.0
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 9.0e-09 65.5 76 48.7
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 1.7e-07 61.2 104 34.6
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.2e-07 60.8 68 45.6


User provided reference genes

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