Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 5.4e-289 996.9 481 100.0
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.1e-261 905.2 483 89.6
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.1e-261 905.2 483 89.6
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.6e-259 898.3 478 88.3
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 5.8e-259 897.1 479 88.7
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 9.9e-259 896.3 479 88.9
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.3e-258 896.0 479 88.5
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.3e-258 896.0 480 88.5
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 6.4e-258 893.6 480 87.7
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 8.4e-258 893.3 478 87.9
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.9e-257 892.1 480 88.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 3.2e-257 891.3 479 88.1
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.2e-257 891.3 480 87.5
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 7.1e-257 890.2 478 88.5
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 6.0e-256 887.1 475 88.0
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 6.0e-256 887.1 484 88.6
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 7.9e-256 886.7 478 87.9
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.3e-255 885.2 478 87.7
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.0e-255 884.8 479 87.1
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.1e-255 884.0 481 87.7
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 4.3e-254 880.9 483 85.5
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.3e-253 879.4 478 87.4
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.3e-253 879.4 479 86.8
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.6e-253 879.0 478 87.0
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.8e-253 877.5 479 86.6
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 6.2e-253 877.1 479 86.6
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 6.2e-253 877.1 482 86.3
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.4e-252 875.9 478 86.4
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.4e-252 875.9 481 86.5
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 2.4e-252 875.2 482 85.9
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.1e-252 874.8 475 86.1
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.0e-252 874.4 479 86.6
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 4.0e-252 874.4 482 86.5
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 9.0e-252 873.2 479 86.4
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.5e-251 872.5 476 85.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.0e-251 872.1 485 85.8
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.0e-251 872.1 475 85.7
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 9.9e-251 869.8 478 86.8
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.7e-250 869.0 486 84.2
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.9e-250 868.2 478 85.8
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.9e-250 868.2 478 84.9
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.9e-250 867.5 485 85.2
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 8.4e-250 866.7 478 85.4
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 8.4e-250 866.7 479 85.4
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.9e-249 865.5 480 86.5
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 2.4e-249 865.1 479 85.6
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.2e-249 864.4 478 84.7
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.2e-248 862.8 478 85.6
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.2e-248 862.8 483 85.3
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 4.6e-248 860.9 497 83.3
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.6e-248 860.9 485 83.9
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 6.0e-248 860.5 481 84.4
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.0e-247 859.8 482 86.3
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.0e-247 859.8 479 86.0
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 1.9e-246 855.5 480 85.0
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.9e-246 855.5 480 85.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.5e-246 855.1 479 84.8
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 2.5e-246 855.1 479 86.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.3e-246 854.7 479 85.4
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 4.3e-246 854.4 483 84.7
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 5.6e-246 854.0 479 84.3
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 7.4e-246 853.6 479 84.6
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 9.6e-246 853.2 480 85.4
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.1e-245 852.0 479 85.0
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.8e-245 851.7 479 83.9
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 2.8e-245 851.7 479 84.3
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 6.2e-245 850.5 478 83.7
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 8.2e-245 850.1 479 83.7
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.8e-244 849.0 472 85.0
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.4e-244 848.6 480 84.8
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.0e-244 847.8 459 86.9
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.0e-244 847.8 441 90.5
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 6.9e-244 847.0 479 83.1
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 9.0e-244 846.7 479 83.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 9.0e-244 846.7 479 84.1
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.2e-243 846.3 479 83.7
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.2e-243 846.3 487 83.2
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.2e-243 846.3 441 90.2
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.5e-243 845.9 479 85.2
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 7.6e-243 843.6 478 84.5
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 7.6e-243 843.6 479 83.5
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.7e-242 842.4 479 83.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.2e-242 842.0 478 83.1
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 8.4e-242 840.1 482 83.6
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 3.2e-241 838.2 480 82.9
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 9.3e-241 836.6 478 82.2
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 6.0e-240 833.9 478 81.8
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.0e-239 833.2 472 84.1
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.3e-239 832.0 472 83.9
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 1.9e-238 828.9 505 79.6
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.3e-237 826.2 494 81.2
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.8e-237 825.1 480 81.9
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 8.2e-237 823.5 482 82.0
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.4e-236 822.8 478 83.1
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 3.4e-235 818.1 456 83.8
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 5.9e-235 817.4 455 84.0
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 7.2e-233 810.4 481 80.2
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.0e-231 806.6 504 79.0
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.0e-226 790.0 475 80.0
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.0e-226 787.7 502 77.5
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.0e-226 787.7 475 78.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 6.5e-226 787.3 507 77.3
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.2e-221 772.3 460 81.5
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 4.5e-219 764.6 480 77.9
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-218 762.7 480 78.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.3e-213 746.5 483 76.0
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.8e-213 745.3 505 74.3
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 7.0e-212 740.7 386 88.3
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 8.0e-208 727.2 476 73.1
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 3.3e-206 721.8 450 75.8
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.1e-204 716.8 482 74.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 5.9e-203 711.1 444 76.6
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.5e-201 706.4 439 75.6
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 8.0e-192 674.1 464 73.1
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.4e-180 636.0 366 78.7
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.0e-178 629.0 457 68.9
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.9e-178 628.6 367 77.9
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 8.6e-170 600.9 480 65.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 6.6e-154 548.1 419 67.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 3.8e-149 532.3 304 80.9
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-143 514.2 281 86.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.5e-142 510.4 304 78.9
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 2.6e-142 509.6 275 86.9
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 9.3e-140 501.1 410 61.5
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.2e-134 484.2 307 77.2
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 1.0e-133 481.1 435 54.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.9e-127 458.4 308 72.1
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 9.4e-108 394.8 211 89.6
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.8e-104 383.3 254 72.8
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 9.1e-103 378.3 228 78.9
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 9.1e-103 378.3 228 78.9
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 5.0e-101 372.5 417 49.6
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 2.6e-94 350.1 467 45.4
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.6e-91 340.9 200 83.0
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.4e-79 300.4 428 43.7
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.5e-76 291.2 152 84.9
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 3.7e-72 276.6 180 72.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 2.4e-71 273.9 180 72.2
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 6.2e-67 259.2 172 72.1
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 3.1e-66 256.9 172 71.5
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.5e-49 201.4 110 82.7
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.5e-49 201.4 110 82.7
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 3.9e-45 186.8 111 77.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.3e-37 161.8 97 77.3
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.1e-37 159.8 95 85.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.9e-36 157.9 105 71.4
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.7e-32 144.8 86 79.1
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 4.9e-32 143.3 81 76.5
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 2.5e-28 131.0 77 76.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 4.2e-23 113.6 135 44.4
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.2e-22 112.1 56 91.1
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.8e-19 100.9 64 71.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 6.5e-16 89.7 72 66.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 6.5e-16 89.7 72 66.7
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 3.2e-15 87.4 79 53.2
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 7.1e-15 86.3 73 63.0
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 9.3e-15 85.9 45 84.4
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 5.1e-13 80.1 46 82.6
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 9.6e-12 75.9 61 57.4
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 1.1e-10 72.4 34 91.2
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 3.4e-09 67.4 37 86.5
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 1.3e-08 65.5 56 57.1
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 2.9e-08 64.3 56 57.1
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 2.9e-08 64.3 56 57.1
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 3.8e-08 63.9 59 52.5
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 6.5e-08 63.2 56 55.4
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 8.4e-08 62.8 89 40.4
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 1.1e-07 62.4 80 45.0
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 1.9e-07 61.6 56 55.4
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 1.9e-07 61.6 56 55.4
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 4.2e-07 60.5 56 55.4
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 5.5e-07 60.1 49 57.1
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 6.1e-06 56.6 40 60.0
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 7.9e-06 56.2 35 74.3


User provided reference genes

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