Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 4.3e-258 894.0 418 100.0
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 7.0e-192 674.1 400 78.5
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.3e-185 653.3 419 74.2
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.2e-180 636.7 399 72.9
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 5.2e-179 631.3 406 72.4
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 1.4e-176 623.2 399 71.2
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.8e-176 622.9 373 77.5
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 3.1e-176 622.1 365 77.3
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 1.6e-175 619.8 365 77.8
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 2.9e-174 615.5 418 68.9
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.5e-173 613.2 413 68.5
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.6e-172 609.8 373 74.0
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.1e-172 609.4 428 65.9
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 3.6e-172 608.6 416 67.5
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 4.7e-172 608.2 419 67.1
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 4.7e-172 608.2 416 68.3
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 2.3e-171 605.9 399 71.2
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 3.0e-171 605.5 416 67.8
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.0e-171 605.1 365 75.6
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.2e-170 603.6 393 70.5
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.5e-170 603.2 365 74.0
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 2.6e-170 602.4 364 74.2
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 9.8e-170 600.5 365 75.3
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.2e-169 599.4 366 74.6
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 2.2e-169 599.4 400 69.5
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.2e-169 599.4 365 74.8
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 4.9e-169 598.2 415 67.5
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 8.3e-169 597.4 385 71.2
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.4e-168 596.7 393 69.2
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.4e-168 596.7 382 71.5
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 1.8e-168 596.3 375 71.7
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.8e-168 596.3 365 74.8
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.8e-168 596.3 393 70.0
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 3.1e-168 595.5 364 74.7
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 5.4e-168 594.7 372 71.8
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 5.4e-168 594.7 386 70.5
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 5.4e-168 594.7 368 72.8
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 7.0e-168 594.3 442 64.3
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 4.5e-167 591.7 375 71.2
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 7.7e-167 590.9 364 74.5
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 2.3e-166 589.3 427 66.3
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.9e-166 589.0 372 71.5
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 5.0e-166 588.2 374 69.3
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 6.6e-166 587.8 393 68.7
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 1.5e-165 586.6 419 64.9
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.9e-165 586.3 367 71.1
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 3.3e-165 585.5 398 68.8
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 7.3e-165 584.3 412 64.6
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.1e-164 582.8 371 71.7
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.6e-164 582.0 369 71.3
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 8.0e-164 580.9 382 67.3
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 4.0e-163 578.6 345 76.2
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.5e-162 576.6 367 71.1
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 2.0e-162 576.2 383 67.9
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 3.4e-162 575.5 369 71.0
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 3.4e-162 575.5 386 69.7
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 2.2e-161 572.8 382 67.8
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 2.2e-161 572.8 382 68.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.2e-160 568.9 395 64.6
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.2e-159 567.0 374 69.5
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 1.6e-159 566.6 372 69.1
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 2.0e-159 566.2 373 69.2
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 5.9e-159 564.7 373 68.9
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.0e-158 563.9 385 67.5
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 5.0e-158 561.6 377 67.1
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 6.6e-158 561.2 416 64.2
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 2.5e-157 559.3 403 65.0
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.5e-157 559.3 403 65.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 5.6e-157 558.1 369 68.3
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 3.6e-156 555.4 368 67.9
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 4.7e-156 555.1 382 66.5
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 8.0e-156 554.3 390 67.7
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 8.0e-156 554.3 367 69.8
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.4e-155 553.5 371 69.3
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.0e-154 549.7 393 65.9
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.0e-154 549.7 370 67.0
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 7.5e-154 547.7 375 65.9
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 9.8e-154 547.4 347 73.2
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 2.2e-153 546.2 366 68.0
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 3.7e-153 545.4 386 68.1
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 1.4e-152 543.5 395 64.8
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 5.4e-152 541.6 362 67.4
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.0e-150 537.3 367 67.3
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.8e-147 526.6 365 66.6
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 1.8e-147 526.6 336 72.3
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 5.8e-146 521.5 326 72.4
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 2.2e-145 519.6 401 59.4
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 5.4e-144 515.0 364 65.4
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 6.6e-142 508.1 333 69.4
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 1.5e-141 506.9 370 65.9
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.7e-134 483.4 322 68.3
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.1e-131 474.2 290 72.8
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 1.4e-131 473.8 341 65.1
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.6e-130 469.5 305 68.2
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 4.4e-130 468.8 385 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 9.9e-130 467.6 365 57.3
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.9e-128 463.4 405 53.1
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.4e-128 461.8 405 52.3
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 1.1e-125 454.1 366 55.5
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 7.6e-122 441.4 390 52.8
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.7e-121 440.3 295 68.5
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 5.5e-112 408.7 370 51.4
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 6.0e-103 378.6 272 66.2
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 2.2e-100 370.2 260 66.2
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 6.9e-99 365.2 226 73.9
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 1.7e-89 334.0 365 47.1
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 6.9e-83 312.0 322 51.6
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 2.2e-81 307.0 406 44.1
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 3.6e-71 273.1 241 59.8
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 9.1e-67 258.5 186 64.0
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 8.3e-60 235.3 468 32.5
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 6.3e-52 209.1 194 53.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.6e-50 204.5 235 43.8
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.2e-39 168.3 126 57.1
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 5.4e-35 152.9 102 62.7
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 1.9e-24 117.9 204 35.8
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 8.9e-22 109.0 90 55.6
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 4.9e-20 103.2 61 77.0
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.0e-17 95.5 60 71.7
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.0e-17 95.5 72 58.3
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.9e-17 93.6 61 72.1
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 8.1e-15 85.9 51 76.5
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 8.4e-12 75.9 64 53.1
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 6.0e-10 69.7 43 67.4
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.1e-09 66.6 42 64.3
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.5e-08 65.1 71 47.9


User provided reference genes

Program Settings