Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 1.7e-53 212.6 122 100.0
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 1.7e-26 122.9 65 87.7
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 1.5e-25 119.8 65 87.7
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 3.3e-25 118.6 65 87.7
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 3.3e-25 118.6 65 83.1
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 5.6e-25 117.9 65 86.2
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 5.6e-25 117.9 65 87.7
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 5.6e-25 117.9 65 86.2
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 5.6e-25 117.9 65 86.2
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 9.6e-25 117.1 65 84.6
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 2.1e-24 115.9 69 78.3
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 2.1e-24 115.9 69 78.3
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 2.1e-24 115.9 69 78.3
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 2.1e-24 115.9 69 78.3
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 2.1e-24 115.9 69 78.3
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 2.1e-24 115.9 69 78.3
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 2.1e-24 115.9 65 84.6
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 2.1e-24 115.9 65 84.6
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 2.8e-24 115.5 65 84.6
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 3.6e-24 115.2 65 84.6
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 3.6e-24 115.2 65 84.6
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 4.8e-24 114.8 64 85.9
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 4.8e-24 114.8 65 83.1
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 6.2e-24 114.4 65 84.6
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 8.1e-24 114.0 63 87.3
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 8.1e-24 114.0 63 85.7
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 1.8e-23 112.8 69 75.4
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 1.8e-23 112.8 69 75.4
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 2.4e-23 112.5 65 84.6
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 2.4e-23 112.5 65 84.6
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 9.0e-23 110.5 65 83.1
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 83.1
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 1.2e-22 110.2 65 81.5
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-22 109.8 65 80.0
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 1.5e-22 109.8 65 83.1
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 2.0e-22 109.4 67 77.6
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 3.4e-22 108.6 65 80.0
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 3.4e-22 108.6 65 80.0
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 4.4e-22 108.2 65 81.5
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 5.8e-22 107.8 65 81.5
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 5.8e-22 107.8 65 80.0
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 5.8e-22 107.8 65 81.5
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-21 106.3 65 75.4
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-21 105.9 65 78.5
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.4e-20 102.4 69 69.6
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 4.2e-20 101.7 65 78.5
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 9.3e-20 100.5 65 75.4
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 1.2e-19 100.1 65 75.4
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 1.6e-19 99.8 65 76.9
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.0e-19 97.8 65 72.3
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 8.7e-18 94.0 55 85.5
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.1e-17 93.6 62 74.2
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 3.3e-17 92.0 63 73.0
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.8e-16 89.0 65 72.3
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.8e-16 88.2 68 69.1
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 1.5e-14 83.2 51 82.4
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 5.8e-14 81.3 62 69.4
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 9.9e-14 80.5 50 82.0
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 1.4e-12 76.6 55 72.7
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.6e-11 73.2 62 62.9
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 1.8e-10 69.7 73 46.6
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 1.3e-08 63.5 39 84.6


User provided reference genes

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