Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.8e-64 247.7 125 100.0
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 7.2e-36 154.1 82 93.9
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 9.5e-36 153.7 118 63.6
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.7e-32 142.9 122 63.1
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 5.9e-30 134.4 120 58.3
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 5.6e-28 127.9 109 56.0
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 2.8e-27 125.6 113 52.2
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 2.0e-25 119.4 110 55.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.4e-25 118.6 117 49.6
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 3.4e-25 118.6 113 54.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 9.8e-25 117.1 116 53.4
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 9.8e-25 117.1 87 59.8
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.3e-24 116.7 113 54.9
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 4.9e-24 114.8 103 55.3
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 4.9e-24 114.8 107 55.1
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 4.9e-24 114.8 116 54.3
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.9e-23 112.8 115 52.2
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 2.4e-23 112.5 111 54.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 9.2e-23 110.5 111 54.1
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.0e-22 109.4 111 53.2
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.7e-22 109.0 122 51.6
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.5e-22 108.6 114 51.8
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 4.6e-22 108.2 111 51.4
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 6.0e-22 107.8 110 52.7
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 7.8e-22 107.5 99 52.5
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 7.8e-22 107.5 111 54.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.7e-21 106.3 116 48.3
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.3e-21 105.9 116 50.0
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.9e-21 105.1 109 50.5
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 6.6e-21 104.4 109 50.5
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 6.6e-21 104.4 108 48.1
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 8.6e-21 104.0 107 50.5
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.1e-20 103.6 122 49.2
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.1e-20 103.6 111 49.5
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.9e-20 102.8 116 48.3
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.9e-20 102.8 108 49.1
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.5e-20 102.4 107 47.7
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.5e-20 102.4 116 49.1
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.3e-20 102.1 107 47.7
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.3e-20 102.1 110 44.5
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 3.3e-20 102.1 112 47.3
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 4.3e-20 101.7 109 46.8
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 5.6e-20 101.3 107 49.5
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.6e-20 101.3 116 48.3
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 5.6e-20 101.3 116 47.4
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 5.6e-20 101.3 113 47.8
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 7.3e-20 100.9 108 47.2
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 7.3e-20 100.9 108 47.2
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 7.3e-20 100.9 108 47.2
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.3e-20 100.9 116 48.3
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 7.3e-20 100.9 116 47.4
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 9.5e-20 100.5 116 47.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.2e-19 100.1 111 45.0
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.2e-19 100.1 110 45.5
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.2e-19 100.1 110 45.5
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 2.1e-19 99.4 108 46.3
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.1e-19 99.4 109 45.9
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 2.8e-19 99.0 109 46.8
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 2.8e-19 99.0 123 49.6
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.8e-19 99.0 113 46.0
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.8e-19 99.0 116 47.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 3.6e-19 98.6 113 46.9
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 3.6e-19 98.6 107 48.6
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.6e-19 98.6 111 46.8
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.6e-19 98.6 111 46.8
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.6e-19 98.6 111 46.8
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 3.6e-19 98.6 109 45.9
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 4.7e-19 98.2 118 44.9
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 4.7e-19 98.2 113 46.0
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 6.2e-19 97.8 109 45.9
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 6.2e-19 97.8 109 47.7
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 6.2e-19 97.8 109 47.7
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 8.0e-19 97.4 106 46.2
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 8.0e-19 97.4 69 62.3
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.1e-18 97.1 107 47.7
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.1e-18 97.1 107 47.7
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.1e-18 97.1 101 48.5
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.1e-18 97.1 109 46.8
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.4e-18 96.7 107 47.7
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.4e-18 96.7 116 42.2
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 2.3e-18 95.9 96 49.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.3e-18 95.9 112 43.8
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 3.1e-18 95.5 109 46.8
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 3.1e-18 95.5 113 44.2
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 6.8e-18 94.4 113 46.9
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 8.9e-18 94.0 107 45.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 8.9e-18 94.0 107 47.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.5e-17 93.2 108 45.4
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.5e-17 93.2 108 47.2
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 2.6e-17 92.4 109 46.8
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 2.6e-17 92.4 60 65.0
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 5.8e-17 91.3 73 58.9
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 9.8e-17 90.5 118 42.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.3e-16 90.1 112 39.3
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.7e-16 89.7 111 43.2
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.7e-16 89.7 111 42.3
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.7e-16 88.6 102 46.1
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 3.7e-16 88.6 108 47.2
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 4.9e-16 88.2 59 67.8
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 4.9e-16 88.2 109 43.1
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 6.4e-16 87.8 107 43.9
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.1e-15 87.0 109 40.4
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 1.1e-15 87.0 109 43.1
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.4e-15 86.7 109 42.2
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.2e-15 85.5 111 43.2
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.2e-15 85.5 111 43.2
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.2e-14 83.6 109 40.4
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.2e-14 83.6 109 40.4
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.2e-14 83.6 109 40.4
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.2e-14 83.6 110 40.9
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.6e-14 83.2 113 36.3
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.1e-14 82.8 119 40.3
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 7.8e-14 80.9 126 38.1
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 7.8e-14 80.9 100 41.0
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.3e-13 80.1 108 38.0
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 3.0e-13 79.0 114 38.6
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.9e-13 78.6 57 63.2
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.3e-12 74.3 74 48.6
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.6e-11 73.2 107 35.5
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.8e-11 72.4 98 37.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 3.6e-11 72.0 107 36.4
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 6.2e-11 71.2 115 33.0
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 8.1e-11 70.9 105 35.2
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.1e-10 70.5 115 33.0
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.4e-10 70.1 115 33.0
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.4e-10 70.1 115 33.0
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 2.3e-10 69.3 112 29.5
SGA_v2.0_scaffold130G34329 Striga asiatica HOM05D001969 ORTHO05D009003 2.9e-08 62.4 53 56.6
SalBow8G1290 Salvia bowleyana HOM05D058383 ORTHO05D050794 5.4e-07 58.2 45 62.2
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.7e-06 55.8 61 39.3


User provided reference genes

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