Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.5e-303 1045.0 684 100.0
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.7e-233 812.4 691 81.8
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.1e-230 802.7 678 81.0
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.2e-230 801.2 686 82.4
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 3.1e-229 798.9 685 78.4
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.0e-229 798.5 681 82.2
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.4e-228 795.4 684 80.3
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 6.4e-227 791.2 662 81.7
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.9e-226 789.6 681 80.0
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 6.0e-225 784.6 681 78.6
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.7e-224 783.1 673 82.3
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 3.9e-224 781.9 669 79.1
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.1e-222 776.2 682 78.7
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 4.7e-222 775.0 623 86.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.1e-221 773.9 676 80.3
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.3e-219 766.9 680 78.7
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.7e-219 766.5 678 79.4
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.8e-219 765.4 678 81.3
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.7e-217 759.2 688 74.9
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 7.8e-217 757.7 682 79.2
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.8e-217 757.7 658 81.2
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.7e-216 756.5 657 77.8
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.7e-216 756.5 682 74.8
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.5e-215 752.7 672 76.8
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 3.3e-215 752.3 672 76.6
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.3e-215 752.3 682 78.9
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 4.3e-215 751.9 688 74.4
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 5.6e-215 751.5 669 79.7
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.6e-215 751.5 682 78.9
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 5.6e-215 751.5 660 75.9
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 9.6e-215 750.7 667 70.5
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.6e-214 750.0 680 76.3
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.6e-214 750.0 669 79.5
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 8.1e-214 747.7 701 70.5
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.1e-213 747.3 662 81.0
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.4e-213 746.9 682 72.1
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.4e-213 746.9 662 81.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.8e-213 746.5 658 81.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 2.0e-212 743.0 697 77.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 2.0e-212 743.0 698 74.6
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.6e-212 742.7 677 79.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.4e-212 742.3 671 79.6
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 4.4e-212 741.9 676 76.2
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.2e-211 739.6 664 79.2
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 2.9e-211 739.2 693 79.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 3.8e-211 738.8 678 75.1
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 8.4e-211 737.6 675 75.1
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.1e-210 737.3 674 75.7
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.9e-210 736.5 680 79.6
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 2.4e-210 736.1 672 78.7
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 4.2e-210 735.3 695 76.5
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 9.3e-210 734.2 679 74.4
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 3.5e-209 732.3 672 76.9
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.7e-208 729.9 672 78.4
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.0e-208 729.2 678 74.5
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.0e-208 729.2 647 80.1
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 6.6e-208 728.0 676 76.6
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-207 726.9 688 73.5
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.5e-207 726.9 663 73.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-207 726.5 688 73.4
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.9e-207 726.5 688 73.4
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.5e-207 726.1 656 77.9
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 4.3e-207 725.3 688 73.5
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 4.3e-207 725.3 676 76.9
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 5.6e-207 724.9 687 73.5
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-206 723.8 688 73.4
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.3e-206 723.8 688 73.4
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.3e-206 723.8 660 76.1
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.6e-206 723.4 667 71.8
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.8e-206 721.8 678 74.3
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.1e-205 720.7 684 72.8
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 6.9e-205 718.0 674 76.3
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.6e-204 714.5 689 72.4
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.9e-203 712.6 688 72.4
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.8e-203 712.2 666 76.6
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.9e-203 711.8 681 70.0
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 8.4e-203 711.1 665 75.9
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.4e-202 710.3 663 75.4
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.4e-202 709.5 650 77.7
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.5e-202 708.4 659 74.4
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.5e-202 708.4 688 72.1
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 7.1e-202 708.0 663 73.6
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.2e-201 707.2 682 76.5
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 6.7e-200 701.4 665 72.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 6.7e-200 701.4 666 73.4
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 8.7e-200 701.0 661 76.9
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.3e-198 697.2 672 77.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.8e-198 696.0 662 74.5
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 4.8e-198 695.3 682 72.9
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.8e-197 693.3 579 80.0
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 6.9e-197 691.4 673 76.5
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.5e-196 690.3 663 67.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.5e-196 688.7 664 71.5
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 5.8e-196 688.3 556 76.8
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.8e-195 685.6 664 72.0
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 4.2e-194 682.2 671 71.2
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 9.3e-194 681.0 648 70.5
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.6e-193 680.2 718 63.4
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.3e-192 676.4 620 75.8
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 8.7e-192 674.5 609 79.6
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.5e-188 662.1 663 74.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 4.5e-188 662.1 554 78.5
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.3e-183 646.0 650 70.9
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.4e-181 639.8 664 59.5
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 9.0e-181 637.9 580 78.8
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.2e-180 637.5 675 65.3
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.1e-178 630.9 690 66.4
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 4.8e-174 615.5 663 70.0
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.4e-173 614.0 664 68.4
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 5.9e-172 608.6 529 83.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 9.4e-170 601.3 534 83.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.2e-164 584.3 678 70.6
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.2e-162 576.2 527 79.7
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.2e-156 557.8 613 64.8
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 8.8e-152 541.6 733 63.8
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 4.2e-146 522.7 696 54.6
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.0e-143 513.8 526 74.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.1e-141 506.1 669 54.7
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.3e-139 501.1 506 74.1
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 4.7e-137 492.7 674 53.4
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.4e-133 479.2 529 64.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.5e-130 470.3 632 54.4
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.8e-112 411.0 511 59.1
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.9e-110 403.7 298 72.5
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.4e-109 401.4 311 72.0
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.1e-108 397.5 247 78.1
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 9.9e-103 378.6 312 75.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 4.6e-100 369.8 525 45.1
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.8e-100 369.0 478 66.3
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.6e-92 343.2 476 59.7
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.9e-86 323.9 199 92.0
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.5e-77 293.1 288 89.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.8e-75 288.1 310 53.2
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.4e-72 278.5 175 79.4
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.4e-72 277.7 290 56.2
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 7.6e-71 272.7 239 57.3
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.3e-70 271.9 288 56.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 6.7e-67 259.6 215 81.9
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.3e-65 255.4 319 71.2
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 3.7e-57 227.3 296 46.6
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 6.3e-57 226.5 138 81.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 2.2e-54 218.0 298 48.7
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.3e-51 208.0 230 52.6
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 6.3e-49 199.9 289 80.3
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-48 198.4 111 88.3
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.9e-46 191.0 111 85.6
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 5.7e-42 176.8 167 59.3
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.1e-40 172.6 183 56.8
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.4e-40 172.2 87 89.7
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-33 147.5 322 55.9
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.4e-32 145.6 131 54.2
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.7e-31 139.8 98 74.5
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.0e-30 137.1 107 68.2
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.5e-30 136.7 95 74.7
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-29 136.0 98 74.5
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.0e-22 112.8 556 30.9
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 8.6e-22 109.8 176 40.3
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 5.2e-19 100.5 69 68.1
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.2e-18 99.4 158 39.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.0e-18 98.6 528 31.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 5.4e-16 90.5 211 28.0
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 2.7e-15 88.2 68 61.8
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.9e-15 87.0 68 66.2
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 1.0e-14 86.3 62 64.5
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-13 82.4 63 61.9
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.6e-12 79.0 64 57.8
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 4.7e-12 77.4 163 36.2
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.6e-10 71.6 116 42.2
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.4e-10 71.2 54 64.8
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 9.8e-10 69.7 72 51.4
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.1e-08 66.2 68 55.9
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 1.1e-08 66.2 88 42.0
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 3.2e-08 64.7 59 52.5
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 7.0e-08 63.5 49 59.2
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-07 62.8 39 66.7
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 4.6e-07 60.8 44 61.4
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 3.9e-06 57.8 114 38.6
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 5.0e-06 57.4 51 54.9


User provided reference genes

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