Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 4.1e-82 308.1 170 100.0
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.1e-63 246.9 170 79.4
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 2.5e-63 245.7 171 76.6
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 4.2e-63 245.0 170 79.4
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 5.5e-63 244.6 171 76.0
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 5.5e-63 244.6 170 79.4
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 7.2e-63 244.2 170 77.6
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 9.5e-63 243.8 170 77.6
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 8.0e-62 240.7 170 77.6
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.8e-61 239.6 170 75.9
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 2.3e-61 239.2 170 75.3
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 4.0e-61 238.4 170 77.6
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.2e-61 238.0 170 75.3
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.2e-60 236.9 170 76.5
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 2.0e-60 236.1 163 78.5
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.0e-60 236.1 171 76.0
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.0e-60 236.1 170 77.6
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 3.4e-60 235.3 170 75.9
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 3.4e-60 235.3 170 75.3
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 5.7e-60 234.6 170 75.3
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.7e-59 233.0 170 74.7
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.7e-59 233.0 170 74.7
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.8e-59 232.3 170 73.5
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.8e-59 232.3 170 73.5
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 6.3e-59 231.1 170 73.5
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 6.3e-59 231.1 170 74.7
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.1e-58 230.3 170 73.5
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.8e-58 229.6 170 72.4
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 3.1e-58 228.8 170 73.5
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 3.1e-58 228.8 172 73.3
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 3.1e-58 228.8 170 71.8
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.1e-58 228.8 170 71.8
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 4.1e-58 228.4 172 73.3
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.1e-58 228.4 170 71.8
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 5.4e-58 228.0 171 74.3
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 7.0e-58 227.6 171 73.7
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 7.0e-58 227.6 170 71.2
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 9.2e-58 227.3 170 72.9
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 9.2e-58 227.3 171 74.9
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.6e-57 226.5 170 73.5
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 2.0e-57 226.1 170 72.4
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.7e-57 225.7 170 71.8
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.7e-57 225.7 170 71.8
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 2.7e-57 225.7 170 71.2
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.7e-57 225.7 170 70.6
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.5e-57 225.3 170 70.6
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 4.5e-57 224.9 172 70.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 7.7e-57 224.2 170 71.8
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 7.7e-57 224.2 170 70.0
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.0e-56 223.8 171 71.3
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.7e-56 223.0 170 72.9
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.7e-56 223.0 170 69.4
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.3e-56 222.6 171 73.7
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 3.8e-56 221.9 170 70.0
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 3.8e-56 221.9 170 72.4
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.8e-56 221.9 158 79.1
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 5.0e-56 221.5 171 73.1
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 6.6e-56 221.1 172 70.9
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.5e-55 219.9 170 72.4
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.9e-55 219.5 170 70.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.9e-55 219.5 174 70.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.5e-55 219.2 170 65.9
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 70.2
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 7.3e-55 217.6 170 70.0
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 7.3e-55 217.6 172 70.3
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 9.5e-55 217.2 171 69.0
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 9.5e-55 217.2 170 69.4
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.6e-54 216.5 175 71.4
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 69.0
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 3.6e-54 215.3 172 69.2
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 3.6e-54 215.3 170 68.8
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 6.1e-54 214.5 170 67.6
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 8.0e-54 214.2 170 70.0
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 8.0e-54 214.2 172 68.6
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.8e-53 213.0 170 67.6
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.8e-53 213.0 170 68.2
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.3e-53 212.6 166 69.9
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.2e-53 211.5 170 67.6
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.2e-53 211.5 172 66.9
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 5.2e-53 211.5 171 67.3
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 6.8e-53 211.1 170 67.1
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 6.8e-53 211.1 170 68.8
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 8.9e-53 210.7 173 68.8
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.5e-52 209.9 172 67.4
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.0e-52 209.5 171 67.8
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 67.6
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 67.1
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.0e-52 209.5 171 67.8
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 67.6
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 67.1
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 2.6e-52 209.1 170 66.5
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.6e-52 209.1 159 71.7
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 3.4e-52 208.8 171 67.3
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 4.4e-52 208.4 170 66.5
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 4.4e-52 208.4 170 66.5
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 4.4e-52 208.4 171 67.3
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.4e-52 208.4 170 65.9
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 4.4e-52 208.4 173 66.5
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 5.7e-52 208.0 170 66.5
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 5.7e-52 208.0 171 67.3
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 7.5e-52 207.6 171 67.3
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 9.8e-52 207.2 170 65.9
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 9.8e-52 207.2 170 65.9
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-51 206.8 170 67.1
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-51 206.8 170 67.1
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 1.3e-51 206.8 170 67.1
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.3e-51 206.8 170 65.9
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-51 206.5 170 65.9
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-51 206.5 170 65.9
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.7e-51 206.5 170 65.9
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.7e-51 206.5 170 67.1
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.7e-51 206.5 171 67.3
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.7e-51 206.5 167 66.5
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.2e-51 206.1 166 66.9
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 2.9e-51 205.7 170 66.5
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.9e-51 205.7 172 68.0
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.9e-51 205.7 170 66.5
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 4.9e-51 204.9 175 64.0
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 6.4e-51 204.5 170 65.3
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 8.3e-51 204.1 166 69.9
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 8.3e-51 204.1 167 65.9
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 8.3e-51 204.1 172 67.4
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 8.3e-51 204.1 171 68.4
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 8.3e-51 204.1 171 68.4
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.8e-50 203.0 167 65.9
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 4.1e-50 201.8 167 65.9
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 5.4e-50 201.4 171 66.1
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 7.0e-50 201.1 170 64.1
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.6e-49 199.9 171 67.3
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 2.7e-49 199.1 170 61.8
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 3.5e-49 198.7 149 75.2
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 3.5e-49 198.7 172 66.9
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 7.8e-49 197.6 170 62.9
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 3.9e-48 195.3 171 65.5
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 5.0e-48 194.9 171 64.3
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.5e-47 193.4 163 61.3
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.2e-46 190.3 170 61.8
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.1e-46 189.5 173 64.7
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 9.2e-42 174.1 102 81.4
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.2e-41 173.7 102 82.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 1.7e-40 169.9 101 79.2
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.8e-38 162.5 100 76.0
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.2e-36 157.1 171 56.7
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 4.4e-36 155.2 144 60.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.3e-35 153.7 171 57.3
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 4.9e-35 151.8 172 54.1
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.1e-34 150.6 176 52.3
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 6.0e-33 144.8 175 45.7
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.0e-32 144.1 167 47.3
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 6.6e-32 141.4 171 45.6
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.2e-30 137.1 178 47.8
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.6e-30 135.6 170 44.1
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.4e-29 133.7 221 42.5
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 1.6e-25 120.2 174 47.7
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.1e-25 119.8 146 47.9
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.8e-25 117.9 70 77.1
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.1e-24 115.2 70 75.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 8.6e-24 114.4 139 43.9
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 2.5e-23 112.8 171 43.3
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 8.9e-21 104.4 171 44.4
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 2.6e-20 102.8 169 41.4
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.4e-19 97.8 81 64.2
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.4e-18 95.1 67 68.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.9e-10 70.1 44 70.5
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.4e-10 69.7 70 70.0
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.2e-06 55.1 65 56.9


User provided reference genes

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