Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G140400 Manihot esculenta HOM05D008201 ORTHO05D005639 4.8e-67 258.5 219 100.0
Gorai.009G189500 Gossypium raimondii HOM05D008201 ORTHO05D005639 8.5e-24 114.8 193 66.8
Gohir.A05G181000 Gossypium hirsutum HOM05D008201 ORTHO05D005639 1.0e-21 107.8 174 66.7
CiPaw.08G071500 Carya illinoinensis HOM05D008201 ORTHO05D005639 3.0e-21 106.3 151 66.9
Potri.005G248100 Populus trichocarpa HOM05D008201 ORTHO05D005639 6.3e-19 98.6 233 54.5
Glyma.04G009400 Glycine max HOM05D008201 ORTHO05D005639 7.0e-18 95.1 223 62.8
CSS0003901 Camellia sinensis var. sinensis HOM05D008201 ORTHO05D005639 3.5e-17 92.8 156 61.5
Ciclev10002349m.g Citrus clementina HOM05D008201 ORTHO05D005639 5.9e-17 92.0 153 60.8
Cc10_g00870 Coffea canephora HOM05D014976 ORTHO05D005639 1.0e-16 91.3 126 68.3
TAR376G0148 Trochodendron aralioides HOM05D008201 ORTHO05D005639 1.3e-16 90.9 229 53.7
SGA_v2.0_scaffold275G46576 Striga asiatica HOM05D014976 ORTHO05D005639 5.0e-16 89.0 148 60.1
Lsat_1_v5_gn_8_27820 Lactuca sativa HOM05D008201 ORTHO05D005639 1.5e-15 87.4 120 69.2
Atru.chr13.170 Acer truncatum HOM05D008201 ORTHO05D005639 9.5e-15 84.7 242 58.3
Duzib093G2238 Durio zibethinus HOM05D008201 ORTHO05D005639 9.5e-15 84.7 227 62.1
Aqoxy6G01838 Aquilegia oxysepala HOM05D008201 ORTHO05D005639 1.2e-14 84.3 142 54.9
Sopen04g035830 Solanum pennellii HOM05D014976 ORTHO05D005639 1.6e-14 84.0 143 53.1
Thecc.08G055500 Theobroma cacao HOM05D008201 ORTHO05D005639 1.6e-14 84.0 236 61.9
Duzib116G0781 Durio zibethinus HOM05D008201 ORTHO05D005639 2.8e-14 83.2 189 54.5
Gohir.D05G184000 Gossypium hirsutum HOM05D008201 ORTHO05D005639 3.6e-14 82.8 175 61.1
Duzib041G0568 Durio zibethinus HOM05D008201 ORTHO05D005639 4.7e-14 82.4 137 61.3
Nitab4.5_0000588g0250 Nicotiana tabacum HOM05D014976 ORTHO05D005639 1.0e-13 81.3 144 52.1
COL.COLO4_21609 Corchorus olitorius HOM05D008201 ORTHO05D005639 1.8e-13 80.5 60 73.3
Sabra05G0191700 Salix brachista HOM05D008201 ORTHO05D005639 3.0e-13 79.7 134 43.3
HanXRQChr08g0216051 Helianthus annuus HOM05D008201 ORTHO05D005639 5.2e-13 79.0 129 64.3
CAN.G311.98 Capsicum annuum HOM05D014976 ORTHO05D005639 8.8e-13 78.2 145 51.7
Peaxi162Scf00174g01621 Petunia axillaris HOM05D014976 ORTHO05D005639 8.8e-13 78.2 180 51.7
Oeu016882.1 Olea europaea HOM05D008201 ORTHO05D005639 1.5e-12 77.4 129 62.0
Prupe.1G356400 Prunus persica HOM05D008201 ORTHO05D005639 4.4e-12 75.9 162 53.7
BolC2t09364H Brassica oleracea HOM05D008570 ORTHO05D005639 1.3e-11 74.3 85 55.3
PGSC0003DMG400009968 Solanum tuberosum HOM05D014976 ORTHO05D005639 1.3e-11 74.3 134 50.0
arahy.Tifrunner.gnm1.ann1.DA1J6X Arachis hypogaea HOM05D008201 ORTHO05D005639 2.8e-11 73.2 80 57.5
arahy.Tifrunner.gnm1.ann1.QP4M0U Arachis hypogaea HOM05D008201 ORTHO05D005639 2.8e-11 73.2 80 57.5
Carub.0002s2307 Capsella rubella HOM05D008570 ORTHO05D005639 3.7e-11 72.8 88 55.7
Nn6g31832 Nelumbo nucifera HOM05D008201 ORTHO05D005639 4.9e-11 72.4 244 56.6
MD08G1004500 Malus domestica HOM05D008201 ORTHO05D005639 1.1e-10 71.2 162 53.7
TWI36G0214 Tripterygium wilfordii HOM05D008201 ORTHO05D005639 1.1e-10 71.2 64 62.5
vmacro04391 Vaccinium macrocarpon HOM05D008201 ORTHO05D005639 1.1e-10 71.2 62 75.8
A07p28610 Brassica napus HOM05D008570 ORTHO05D005639 4.1e-10 69.3 169 43.8
MD15G1003900 Malus domestica HOM05D008201 ORTHO05D005639 5.4e-10 68.9 171 52.0
THA.LOC104809672 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 5.4e-10 68.9 147 47.6
AL2G36240 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 9.2e-10 68.2 84 56.0
AT1G76180 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.6e-09 67.4 143 52.4
TAR381G0904 Trochodendron aralioides HOM05D008201 ORTHO05D005639 1.6e-09 67.4 65 67.7
AT1G20450 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 2.0e-09 67.0 85 51.8
CARHR069730 Cardamine hirsuta HOM05D008570 ORTHO05D005639 2.0e-09 67.0 86 52.3
Oeu046328.1 Olea europaea HOM05D014976 ORTHO05D005639 4.5e-09 65.9 215 51.6
SalBow6G7161 Salvia bowleyana HOM05D014976 ORTHO05D005639 5.9e-09 65.5 229 50.7
TWI12G0216 Tripterygium wilfordii HOM05D008201 ORTHO05D005639 5.9e-09 65.5 62 64.5
Actinidia37964 Actinidia chinensis HOM05D017236 ORTHO05D005639 7.8e-09 65.1 124 61.3
C02p33360 Brassica napus HOM05D008570 ORTHO05D005639 1.3e-08 64.3 84 51.2
FAN15G2778 Fragaria x ananassa HOM05D008201 ORTHO05D005639 1.3e-08 64.3 272 47.4
Cfa014040 Carpinus fangiana HOM05D025300 ORTHO05D005639 1.7e-08 63.9 67 59.7
BcaB07g32047 Brassica carinata HOM05D008570 ORTHO05D005639 2.3e-08 63.5 97 50.5
FAN20G0338 Fragaria x ananassa HOM05D008201 ORTHO05D005639 2.3e-08 63.5 163 49.1
Gohir.A01G107800 Gossypium hirsutum HOM05D008201 ORTHO05D005639 2.3e-08 63.5 160 36.9
PGR083G0607 Punica granatum HOM05D008201 ORTHO05D005639 2.9e-08 63.2 61 65.6
Dinv39575 Davidia involucrata HOM05D008201 ORTHO05D005639 3.8e-08 62.8 233 51.5
Haze_22743 Corylus avellana HOM05D025300 ORTHO05D005639 5.0e-08 62.4 65 56.9
TAR381G0320 Trochodendron aralioides HOM05D008201 ORTHO05D005639 5.0e-08 62.4 64 57.8
CiPaw.07G140900 Carya illinoinensis HOM05D008201 ORTHO05D005639 6.6e-08 62.0 65 64.6
CARHR020900 Cardamine hirsuta HOM05D008570 ORTHO05D005639 8.6e-08 61.6 88 47.7
FAN27G2977 Fragaria x ananassa HOM05D008201 ORTHO05D005639 8.6e-08 61.6 277 43.3
MBI05_g17940_MAGBIO Magnolia biondii HOM05D008201 ORTHO05D005639 8.6e-08 61.6 133 57.9
Carub.0001s1991 Capsella rubella HOM05D008570 ORTHO05D005639 1.1e-07 61.2 165 42.4
AL1G33370 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 1.5e-07 60.8 167 44.3
AT1G20440 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.5e-07 60.8 167 43.7
BcaC08g47283 Brassica carinata HOM05D008570 ORTHO05D005639 1.5e-07 60.8 162 43.2
BolC6t40053H Brassica oleracea HOM05D008570 ORTHO05D005639 1.5e-07 60.8 162 43.2
BraA02t07079Z Brassica rapa HOM05D008570 ORTHO05D005639 1.5e-07 60.8 61 57.4
Carub.0001s1992 Capsella rubella HOM05D008570 ORTHO05D005639 1.5e-07 60.8 91 46.2
Eucgr.F01726 Eucalyptus grandis HOM05D008201 ORTHO05D005639 1.9e-07 60.5 137 38.0
Lsat_1_v5_gn_8_28441 Lactuca sativa HOM05D008570 ORTHO05D005639 1.9e-07 60.5 111 51.4
BcaB05g24972 Brassica carinata HOM05D008570 ORTHO05D005639 3.3e-07 59.7 61 55.7
A02p20480 Brassica napus HOM05D008570 ORTHO05D005639 3.3e-07 59.7 61 55.7
Duzib052G0191 Durio zibethinus HOM05D018564 ORTHO05D019060 3.3e-07 59.7 126 42.1
QL02p013717 Quercus lobata HOM05D008201 ORTHO05D005639 3.3e-07 59.7 58 60.3
Dinv31918 Davidia involucrata HOM05D008201 ORTHO05D005639 4.3e-07 59.3 130 54.6
Hund01744 Selenicereus undatus HOM05D017236 ORTHO05D005639 4.3e-07 59.3 133 51.1
TAR628G0948 Trochodendron aralioides HOM05D008201 ORTHO05D005639 5.6e-07 58.9 137 55.5
Medtr3g117290 Medicago truncatula HOM05D015205 ORTHO05D005639 9.5e-07 58.2 91 45.1
BraA06t24754Z Brassica rapa HOM05D008570 ORTHO05D005639 1.2e-06 57.8 101 47.5
Gorai.002G119600 Gossypium raimondii HOM05D008201 ORTHO05D005639 1.2e-06 57.8 152 34.9
BNapus_Darmor_BZH_scaffold_170p00020 Brassica napus HOM05D008570 ORTHO05D005639 1.6e-06 57.4 96 49.0
AUR62036907 Chenopodium quinoa HOM05D017236 ORTHO05D005639 1.6e-06 57.4 123 39.0
MSTRG.24222 Avicennia marina HOM05D014976 ORTHO05D005639 2.1e-06 57.0 157 48.4
BcaC05g25955 Brassica carinata HOM05D008570 ORTHO05D005639 2.1e-06 57.0 97 48.5
C05p19040 Brassica napus HOM05D008570 ORTHO05D005639 2.1e-06 57.0 97 48.5
BolC5t30605H Brassica oleracea HOM05D008570 ORTHO05D005639 2.1e-06 57.0 97 48.5
Gohir.D01G094300 Gossypium hirsutum HOM05D008201 ORTHO05D005639 2.1e-06 57.0 137 45.3
FvH4_2g37690 Fragaria vesca HOM05D008201 ORTHO05D005639 2.8e-06 56.6 271 42.8
Lj4A14T47 Lonicera japonica HOM05D008201 ORTHO05D005639 4.7e-06 55.8 144 38.9
THA.LOC104813763 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 4.7e-06 55.8 66 54.5
AL1G33380 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 6.1e-06 55.5 86 45.3
BolC7t42843H Brassica oleracea HOM05D008570 ORTHO05D005639 8.0e-06 55.1 95 46.3
DCAR_009522 Daucus carota HOM05D008201 ORTHO05D005639 8.0e-06 55.1 127 55.9


User provided reference genes

Program Settings