Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 2211.8 1380 100.0
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1655.2 1394 75.7
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1317.4 1451 61.1
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1250.7 1423 59.5
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1230.3 1440 60.6
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1206.8 1498 56.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1199.9 1418 58.3
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 0.0e+00 1192.2 1491 57.1
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1155.2 1409 55.4
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1139.0 1490 53.2
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 0.0e+00 1138.6 1413 56.7
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1137.5 1414 56.2
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1137.1 1394 55.3
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1125.2 1451 53.5
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1119.8 1348 59.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1106.3 1440 54.7
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1104.4 1407 55.2
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1093.2 1477 54.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 1087.8 1418 55.1
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1087.4 1420 55.4
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1087.0 1422 54.7
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 0.0e+00 1082.0 1437 52.5
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1081.2 1417 55.3
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1080.1 1417 55.1
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.9e-311 1073.2 1521 52.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 6.6e-311 1071.2 1414 53.6
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.1e-305 1052.4 1439 53.5
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 6.9e-305 1051.2 1474 51.6
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.3e-303 1047.0 1435 53.8
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.7e-303 1046.6 1448 52.6
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 3.7e-298 1028.9 1471 50.6
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 6.9e-297 1024.6 1480 50.7
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.0e-296 1023.1 1468 52.2
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 5.0e-295 1018.5 1476 50.5
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.5e-295 1017.7 1436 51.2
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 3.7e-290 1002.3 1504 50.6
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.5e-288 996.9 1433 50.6
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.2e-287 993.0 1452 51.9
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 3.8e-287 992.3 1461 52.3
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.5e-286 988.4 1436 50.6
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 8.8e-284 981.1 1517 49.4
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 8.2e-282 974.5 1509 48.6
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 9.1e-281 971.1 1461 50.2
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 2.6e-280 969.5 1424 49.6
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 5.5e-278 961.8 1412 51.0
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 6.1e-277 958.4 1430 47.8
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 8.5e-271 937.9 1416 47.5
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 4.7e-269 932.2 1486 47.1
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 5.2e-268 928.7 1253 53.7
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 1.2e-267 927.5 1420 50.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 4.4e-267 925.6 1456 49.9
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.8e-265 920.2 1495 46.3
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 2.1e-261 906.7 1433 48.8
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.8e-261 906.4 1441 46.2
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 5.4e-257 892.1 1421 46.8
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 8.6e-255 884.8 1393 48.3
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 1.5e-254 884.0 1667 44.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 6.8e-252 875.2 1427 47.1
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 4.6e-248 862.4 1432 51.7
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.0e-247 861.3 719 70.7
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.7e-247 860.5 1416 49.2
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 1.2e-245 854.4 1430 45.6
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.2e-245 854.4 1341 46.3
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 2.8e-245 853.2 1537 46.6
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 5.2e-244 849.0 1404 45.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 9.8e-243 844.7 1442 45.7
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 7.3e-238 828.6 1495 43.3
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.6e-237 827.4 1463 44.3
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.7e-234 816.2 1229 50.0
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 6.4e-234 815.5 1483 45.2
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.4e-233 813.5 1444 45.3
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 3.5e-232 809.7 1468 46.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 4.7e-229 799.3 1463 45.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 3.4e-227 793.1 1437 44.3
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 3.8e-226 789.6 1449 45.1
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 2.7e-224 783.5 1496 44.5
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 4.2e-217 759.6 1464 44.8
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-216 758.1 1441 45.2
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 8.7e-215 751.9 1442 45.1
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.1e-213 747.3 1457 43.6
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 4.8e-213 746.1 1440 46.3
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 4.8e-213 746.1 1440 46.3
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 6.2e-213 745.7 1441 45.0
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.8e-212 744.2 1455 45.7
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 3.1e-212 743.4 1483 42.2
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.2e-208 731.5 1488 40.1
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.5e-206 724.5 1238 44.8
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 3.3e-206 723.4 1361 44.7
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.4e-204 718.0 1399 43.5
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 6.9e-204 715.7 1474 44.5
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.4e-201 708.0 1459 42.8
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 3.2e-193 680.2 1408 47.4
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.6e-189 667.9 1417 40.4
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.7e-181 641.3 1465 40.8
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.3e-180 636.3 1116 45.7
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 5.5e-169 599.7 1201 38.9
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.7e-165 587.0 578 64.7
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 9.4e-161 572.4 1436 40.0
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.4e-148 531.9 1398 34.2
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.0e-143 515.8 1516 35.1
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.4e-143 515.4 1253 39.3
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 5.6e-137 493.4 1228 38.1
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 5.4e-132 476.9 757 44.5
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 6.2e-128 463.4 1486 35.1
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 8.6e-122 443.0 1285 34.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.1e-113 416.0 634 45.7
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 3.8e-93 347.8 1488 34.4
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 3.3e-81 308.1 806 40.7
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 5.5e-76 290.8 430 52.1
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.9e-66 258.1 1484 26.5
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 5.9e-62 244.2 1498 28.6
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 6.7e-58 230.7 330 39.7
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.7e-56 226.1 1145 28.6
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.8e-55 222.6 1334 25.6
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.6e-51 209.5 1408 26.1
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.6e-46 192.2 258 47.3
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 1.2e-38 166.8 245 55.5
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.3e-37 163.3 458 34.7
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.8e-37 161.8 173 52.6
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.5e-36 159.8 338 39.6
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.1e-31 143.7 372 36.6
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 4.1e-31 141.7 92 67.4
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.6e-27 129.8 137 59.1
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 6.1e-27 127.9 241 41.9
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.5e-25 123.2 280 43.6
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.6e-22 113.2 64 84.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 2.9e-21 109.0 134 48.5
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.1e-19 102.8 69 72.5
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 2.8e-19 102.4 279 36.9
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.0e-19 100.9 125 51.2
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 6.8e-18 97.8 790 27.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 8.9e-18 97.4 64 67.2
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.3e-16 93.6 287 34.8
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 4.1e-15 88.6 64 65.6
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.5e-14 85.5 368 33.7
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.0e-13 84.0 79 51.9
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 3.0e-13 82.4 309 23.9
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 3.9e-13 82.0 122 46.7
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 5.6e-12 78.2 83 50.6
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.3e-12 77.8 50 70.0
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 3.6e-11 75.5 50 64.0
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 5.2e-10 71.6 82 56.1
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 2.6e-09 69.3 154 37.0
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 3.7e-08 65.5 41 65.9
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 4.9e-08 65.1 92 54.3
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.3e-08 64.3 103 38.8
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 8.3e-08 64.3 66 51.5
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 8.3e-08 64.3 62 61.3
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.1e-07 63.9 67 50.7
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 1.1e-07 63.9 55 50.9
Lsat_1_v5_gn_5_11101 Lactuca sativa HOM05D000912 ORTHO05D001232 1.9e-07 63.2 58 58.6
Lsat_1_v5_gn_4_138780 Lactuca sativa HOM05D067107 ORTHO05D005225 1.6e-06 60.1 58 56.9


User provided reference genes

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