Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1751.5 854 100.0
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1389.0 853 79.8
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1359.7 845 78.2
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1354.3 826 79.7
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1345.1 824 80.2
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1343.2 850 77.3
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1341.6 820 80.1
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1340.5 758 84.3
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1338.6 817 79.1
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1335.5 820 78.7
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1330.1 815 78.0
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1327.8 820 78.3
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1325.8 836 76.8
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1322.4 780 81.7
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1321.2 848 75.9
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1319.7 793 80.7
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1317.0 754 82.5
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1312.0 836 77.4
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1310.4 764 80.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1307.4 770 79.5
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1305.0 760 80.8
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1303.9 793 78.3
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1298.9 831 75.2
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1297.7 768 80.1
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1297.3 839 75.8
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1290.4 762 79.8
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1284.2 773 78.9
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1282.7 753 80.2
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1279.6 754 80.2
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1277.7 768 79.3
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1276.9 750 80.5
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1276.9 841 74.6
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1272.3 757 78.1
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1271.9 750 80.4
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1266.9 784 76.4
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1264.6 770 77.9
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1260.4 751 79.5
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1259.6 758 77.3
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1256.1 798 75.2
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1254.2 850 72.1
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1253.4 761 77.8
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1253.0 820 74.5
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1253.0 826 73.5
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1250.3 755 78.7
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1247.6 765 77.3
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1242.3 757 77.4
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1239.6 757 77.3
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1238.4 765 77.0
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1237.6 760 77.9
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1234.9 742 78.4
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1234.2 845 72.3
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1231.1 764 76.2
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 815 72.8
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1228.8 741 77.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1221.8 811 72.7
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 771 75.2
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1218.8 794 73.3
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1217.6 857 71.1
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 749 76.4
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 816 72.3
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 782 74.4
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1211.1 820 72.2
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1211.1 761 75.3
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 810 72.2
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1209.9 761 75.7
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1209.5 763 75.5
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1208.7 759 75.9
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1208.7 817 72.1
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 758 75.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1206.0 758 75.3
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1205.7 782 73.9
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1201.4 818 72.1
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 692 82.5
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1193.7 795 72.5
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 841 69.0
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 750 73.7
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 776 74.0
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1156.4 814 68.9
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1153.7 802 71.9
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1149.0 688 78.5
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1148.3 779 71.8
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1146.0 776 71.1
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1145.6 764 72.4
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1144.4 703 77.2
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1134.8 663 81.1
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1116.7 695 75.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1110.5 763 71.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1107.8 841 65.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 0.0e+00 1077.4 685 74.6
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 2.6e-310 1068.5 744 69.9
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 3.4e-310 1068.1 914 60.8
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 2.4e-308 1062.0 625 80.6
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 3.8e-285 984.9 745 62.1
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 8.4e-285 983.8 747 60.2
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 2.3e-274 949.1 748 59.6
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.3e-274 949.1 609 74.4
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.4e-263 913.3 639 67.9
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.6e-249 865.9 689 64.0
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 1.4e-244 850.1 626 65.7
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-229 798.5 683 55.2
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.4e-215 753.8 523 67.9
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 5.6e-172 609.0 788 42.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 4.0e-154 549.7 601 51.2
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 5.8e-153 545.8 354 68.6
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 9.7e-132 475.3 359 64.6
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 2.8e-99 367.5 267 66.3
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.8e-90 338.2 289 60.9
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.8e-77 295.0 226 63.3
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.4e-74 283.5 254 57.1
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.2e-62 245.7 148 79.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 5.4e-50 203.8 122 80.3
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.5e-47 195.7 138 65.9
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.1e-41 175.3 127 63.0
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.6e-38 165.6 89 78.7
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 2.6e-28 131.7 92 65.2
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 4.2e-26 124.4 155 47.7
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 7.9e-25 120.2 111 49.5
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 3.4e-20 104.8 114 51.8
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 1.2e-17 96.3 62 75.8
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.5e-15 89.4 56 78.6
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.3e-14 86.3 42 88.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.9e-11 75.1 43 74.4
TWI23G1065 Tripterygium wilfordii HOM05D000161 ORTHO05D414009 8.0e-09 67.0 77 49.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.0e-08 66.6 41 75.6
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.9e-08 64.7 43 74.4
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.1e-07 63.2 70 51.4


User provided reference genes

Program Settings