Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 3.1e-221 771.5 401 100.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.7e-166 589.7 408 78.7
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.9e-130 469.9 406 65.5
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.1e-129 466.5 406 65.3
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 6.8e-128 461.5 433 61.9
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 6.0e-124 448.4 405 61.5
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-122 444.1 405 62.5
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 9.5e-122 441.0 409 61.6
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 9.8e-119 431.0 413 59.6
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 8.3e-118 427.9 376 63.0
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 7.8e-116 421.4 406 58.9
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 3.9e-115 419.1 408 58.1
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 4.3e-114 415.6 406 58.4
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 2.8e-113 412.9 406 57.6
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 8.9e-112 407.9 380 59.7
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.0e-107 394.4 370 58.9
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 4.3e-106 389.0 413 54.7
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 8.1e-105 384.8 404 55.9
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.4e-104 383.3 419 53.9
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 3.4e-103 379.4 411 54.5
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 7.6e-103 378.3 466 50.9
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.9e-101 373.6 467 51.8
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-101 373.6 467 51.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.4e-101 372.1 381 54.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.1e-100 370.2 405 56.3
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 6.6e-99 365.2 391 55.2
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.1e-97 360.1 416 51.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.1e-97 360.1 458 51.3
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 6.2e-97 358.6 411 50.4
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-96 356.7 458 50.4
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.5e-95 352.4 415 52.5
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.2e-94 350.1 405 52.3
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.4e-93 347.4 323 59.1
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-93 346.7 460 49.8
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.6e-92 344.0 428 50.9
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.1e-92 343.6 415 51.1
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 6.7e-91 338.6 438 47.0
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.0e-87 327.0 417 50.6
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 5.8e-87 325.5 403 51.9
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.9e-86 323.2 453 45.9
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.1e-85 321.2 287 63.1
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 3.2e-85 319.7 349 52.4
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.5e-85 318.9 383 48.3
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 7.1e-85 318.5 415 47.7
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.7e-84 316.6 420 46.9
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 2.7e-84 316.6 406 49.3
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.8e-81 306.6 457 45.5
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 8.1e-81 305.1 397 47.6
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 6.9e-80 302.0 416 47.6
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.2e-79 301.2 459 45.1
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.2e-79 301.2 379 48.3
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 4.5e-79 299.3 436 44.7
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 5.8e-79 298.9 396 48.0
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.3e-78 297.7 310 56.5
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 4.2e-77 292.7 404 46.3
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.2e-77 292.7 378 50.5
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.2e-76 291.2 406 46.1
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.6e-76 290.8 423 45.9
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-74 284.6 384 46.4
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 5.7e-74 282.3 253 64.4
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 3.1e-72 276.6 458 43.0
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 4.1e-72 276.2 472 40.5
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 4.1e-72 276.2 456 41.4
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 5.3e-72 275.8 424 45.3
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 9.0e-72 275.0 411 42.1
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 9.0e-72 275.0 456 41.2
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 3.4e-71 273.1 405 45.4
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.9e-70 270.0 389 45.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 3.8e-70 269.6 370 42.4
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 6.5e-70 268.9 463 41.3
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.9e-69 267.3 379 45.6
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 4.2e-69 266.2 460 40.9
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 2.1e-68 263.8 409 43.3
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.1e-68 262.3 412 42.2
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 3.9e-67 259.6 416 42.3
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 3.9e-67 259.6 226 64.6
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.9e-67 259.6 325 50.2
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.5e-66 257.7 252 57.9
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.5e-66 256.9 397 42.1
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.7e-66 255.8 282 56.4
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.3e-65 254.6 393 41.2
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.8e-65 253.4 413 42.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.7e-65 253.1 422 41.0
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 4.8e-65 252.7 430 42.3
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 6.3e-65 252.3 258 53.1
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 8.2e-65 251.9 260 55.4
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.2e-63 248.1 434 39.2
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.2e-63 248.1 416 42.1
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.9e-63 245.7 212 67.0
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 8.5e-62 241.9 422 39.3
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.4e-61 241.1 436 39.4
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 5.5e-61 239.2 418 40.2
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 9.4e-61 238.4 429 40.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.6e-60 236.1 416 39.4
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 8.8e-59 231.9 235 58.7
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 5.7e-58 229.2 404 40.3
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 4.8e-57 226.1 404 38.9
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.1e-56 224.9 456 39.0
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.5e-53 213.8 445 37.5
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.2e-53 213.4 254 50.4
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 7.2e-53 212.2 270 51.1
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-52 211.5 290 48.6
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 5.7e-50 202.6 261 51.3
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.3e-49 199.1 350 38.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.1e-48 198.4 465 35.5
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.5e-45 188.0 421 35.2
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 1.6e-44 184.5 196 54.1
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.6e-44 183.3 327 38.5
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.0e-43 181.8 325 38.5
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.0e-35 155.2 404 32.9
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.2e-34 151.8 284 39.8
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 3.4e-34 150.2 278 41.4
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 6.3e-33 146.0 147 57.8
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 4.1e-32 143.3 115 67.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.2e-29 133.7 255 40.8
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 3.2e-29 133.7 497 28.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 3.2e-29 133.7 280 35.7
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 5.4e-24 116.3 103 64.1
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.3e-22 111.7 109 54.1
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 2.3e-22 110.9 117 55.6
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-21 108.6 135 50.4
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.2e-18 98.6 91 53.8
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.5e-18 98.2 105 61.0
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.4e-17 92.8 87 50.6
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-16 90.9 67 74.6
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 9.2e-16 89.0 81 63.0
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.5e-15 87.0 68 54.4
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.3e-14 85.1 123 42.3
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.1e-13 82.0 148 37.2
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.3e-13 80.5 71 54.9
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 4.7e-12 76.6 74 56.8
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 7.5e-10 69.3 74 45.9
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.2e-09 67.8 137 38.0
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.9e-09 67.4 136 36.8
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 3.5e-07 60.5 109 42.2
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 6.0e-07 59.7 103 37.9
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 2.3e-06 57.8 60 63.3


User provided reference genes

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