Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.3e-199 699.5 357 100.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.8e-173 612.1 354 86.2
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.3e-172 609.0 355 85.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.7e-170 602.8 349 86.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-169 600.1 353 84.7
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-169 600.1 353 84.1
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.4e-169 599.0 349 85.4
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.2e-168 596.7 354 83.9
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.3e-167 592.4 351 84.3
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 6.6e-167 590.9 338 86.7
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 4.3e-166 588.2 331 87.9
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 5.6e-166 587.8 350 84.6
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 5.6e-166 587.8 352 83.8
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.6e-165 586.3 352 84.1
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.1e-165 585.9 330 87.6
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.1e-165 585.9 354 83.3
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 3.6e-165 585.1 348 84.5
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 4.7e-165 584.7 328 87.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-164 583.6 327 87.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.1e-164 583.6 327 87.5
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-164 583.2 338 84.6
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.1e-164 582.0 330 86.4
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.1e-164 582.0 341 84.5
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 4.0e-164 581.6 344 83.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 4.0e-164 581.6 327 87.2
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 4.0e-164 581.6 327 87.2
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 4.0e-164 581.6 327 87.2
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 8.9e-164 580.5 327 86.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 8.9e-164 580.5 352 82.7
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-163 579.7 344 84.6
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.0e-163 579.3 327 87.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.6e-163 578.9 329 86.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.6e-163 578.9 330 86.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 4.4e-163 578.2 333 85.3
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 4.4e-163 578.2 351 80.9
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.4e-163 578.2 371 79.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 5.8e-163 577.8 341 83.3
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.7e-162 576.2 356 82.3
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 2.2e-162 575.9 360 80.8
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.2e-162 575.9 341 83.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.9e-162 575.5 355 80.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.9e-162 575.5 337 84.6
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.9e-162 574.7 337 83.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 6.4e-162 574.3 346 82.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 8.4e-162 573.9 330 85.2
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.4e-162 573.9 352 81.8
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-161 573.5 333 84.7
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-161 573.2 344 83.4
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.4e-161 573.2 344 83.4
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.4e-161 573.2 330 86.4
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-161 572.8 329 85.7
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 2.4e-161 572.4 331 85.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 2.4e-161 572.4 330 85.8
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 3.2e-161 572.0 344 83.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.2e-161 571.6 345 83.5
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.4e-161 571.2 326 86.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.1e-161 570.9 345 83.2
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 9.3e-161 570.5 345 83.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 9.3e-161 570.5 335 83.0
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.6e-160 569.7 354 80.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 2.1e-160 569.3 344 83.7
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 6.0e-160 567.8 330 83.9
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.0e-159 567.0 328 84.1
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 3.0e-159 565.5 336 82.1
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.1e-158 563.5 329 84.5
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.5e-158 562.4 342 80.7
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.5e-158 562.4 343 82.5
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 3.3e-158 562.0 349 80.8
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.6e-158 561.2 328 84.1
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 7.3e-158 560.8 349 80.8
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 7.3e-158 560.8 330 83.6
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 3.6e-157 558.5 332 83.7
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.8e-157 558.1 332 83.7
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.2e-157 557.8 381 75.9
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 8.1e-157 557.4 332 83.1
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.1e-156 557.0 347 79.8
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.1e-156 555.4 332 83.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.1e-156 555.4 332 83.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 6.9e-156 554.3 327 84.1
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-155 553.5 352 78.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 2.0e-155 552.7 335 82.1
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-155 552.0 332 82.8
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 7.6e-155 550.8 325 84.3
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.2e-154 549.3 348 79.0
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.2e-154 549.3 326 83.4
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 3.8e-154 548.5 348 79.0
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.4e-154 547.7 335 82.4
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-153 546.6 349 79.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 3.2e-153 545.4 351 79.8
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.2e-153 545.4 335 82.1
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 5.4e-153 544.7 334 81.1
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.5e-152 542.0 343 80.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.6e-152 541.6 351 80.1
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 6.0e-152 541.2 325 82.2
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 3.9e-151 538.5 325 80.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 5.1e-151 538.1 370 74.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 8.7e-151 537.3 301 87.7
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 8.7e-151 537.3 342 79.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 9.6e-150 533.9 348 77.0
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.1e-149 532.7 345 77.1
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.0e-147 526.2 374 73.0
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.0e-147 526.2 323 79.9
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.4e-146 520.8 388 70.9
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 8.4e-146 520.8 297 86.5
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.2e-144 516.9 411 66.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.8e-141 505.8 329 77.5
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.2e-141 504.6 328 74.1
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.4e-140 503.4 332 76.5
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.9e-138 495.7 347 72.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 3.8e-138 495.4 349 72.8
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 3.8e-138 495.4 359 70.5
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 3.5e-136 488.8 285 85.6
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 6.9e-132 474.6 349 70.8
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 2.0e-131 473.0 356 69.7
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 6.1e-128 461.5 322 68.9
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.9e-127 458.8 262 87.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 8.7e-127 457.6 331 68.0
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 6.3e-125 451.4 330 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.8e-124 449.9 332 66.9
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.2e-123 447.2 325 67.4
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-123 446.8 366 64.8
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.8e-122 442.2 261 84.3
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 6.5e-122 441.4 287 79.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.5e-121 439.5 317 68.1
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.2e-121 438.7 302 71.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 6.7e-119 431.4 336 63.4
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 9.1e-116 421.0 330 62.1
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.5e-115 420.2 333 66.4
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.9e-115 418.3 339 65.8
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.7e-112 408.7 245 83.3
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 8.8e-111 404.4 241 83.8
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-110 402.9 369 58.5
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.8e-108 396.7 241 83.4
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 2.6e-107 392.9 240 82.9
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.7e-106 390.2 300 63.7
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.0e-106 388.7 273 72.9
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.5e-105 386.3 274 67.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.2e-103 378.6 356 60.1
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.7e-101 373.6 262 71.4
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.1e-100 369.4 236 78.8
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.9e-98 362.8 322 57.5
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.5e-98 361.7 246 74.4
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.2e-87 325.5 200 80.0
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.8e-76 290.4 285 59.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 3.3e-73 279.6 203 74.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.8e-62 242.3 283 47.3
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.1e-60 235.3 161 68.9
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.7e-59 233.4 160 71.2
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.3e-57 226.5 129 86.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-56 224.6 358 43.6
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 6.8e-55 218.8 253 53.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.3e-53 214.5 126 82.5
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 2.1e-51 207.2 153 70.6
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.6e-46 190.3 236 42.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.0e-42 176.8 208 48.1
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 7.6e-38 162.2 102 72.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 9.9e-38 161.8 104 74.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-35 154.5 98 73.5
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.1e-35 154.1 96 75.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 2.3e-34 150.6 88 79.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.7e-34 149.1 96 80.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 8.1e-32 142.1 110 70.0
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-29 134.8 86 73.3
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.7e-29 134.4 189 50.8
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 4.2e-28 129.8 76 81.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.7e-24 116.7 58 91.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 3.4e-22 110.2 83 67.5
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-21 108.2 77 67.5
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 8.4e-21 105.5 80 62.5
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.1e-19 100.9 73 58.9
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.0e-18 98.6 57 87.7
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.3e-18 98.2 62 80.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.8e-15 87.8 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 6.9e-07 59.3 48 62.5


User provided reference genes

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