Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G013300 Manihot esculenta HOM05D006931 ORTHO05D015207 6.7e-81 305.1 329 100.0
Manes.06G016000 Manihot esculenta HOM05D006931 ORTHO05D008782 2.1e-18 97.4 46 95.7
TWI36G0594 Tripterygium wilfordii HOM05D016681 ORTHO05D015207 3.6e-18 96.7 90 50.0
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 4.0e-17 93.2 49 83.7
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 4.0e-17 93.2 49 83.7
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 4.0e-17 93.2 49 83.7
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 2.6e-16 90.5 49 83.7
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 3.4e-16 90.1 51 78.4
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 5.8e-16 89.4 49 79.6
Atru.chr1.3932 Acer truncatum HOM05D016681 ORTHO05D015207 7.5e-16 89.0 85 50.6
RcHm_v2.0_Chr4g0385181 Rosa chinensis HOM05D006931 ORTHO05D008782 2.2e-15 87.4 46 80.4
Gohir.A07G164200 Gossypium hirsutum HOM05D006931 ORTHO05D008782 2.9e-15 87.0 49 77.6
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 3.7e-15 86.7 49 77.6
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 3.7e-15 86.7 49 77.6
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 3.7e-15 86.7 49 77.6
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 3.7e-15 86.7 49 81.6
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 3.7e-15 86.7 48 83.3
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 4.9e-15 86.3 49 77.6
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 2.4e-14 84.0 49 77.6
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 3.2e-14 83.6 49 71.4
Atru.chr1.3931 Acer truncatum HOM05D006931 ORTHO05D008782 7.0e-14 82.4 49 77.6
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 7.0e-14 82.4 49 77.6
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 7.0e-14 82.4 49 73.5
SGA_v2.0_scaffold347G49544 Striga asiatica HOM05D006931 ORTHO05D008782 9.2e-14 82.0 49 73.5
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 1.6e-13 81.3 49 77.6
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 2.1e-13 80.9 45 80.0
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 4.6e-13 79.7 49 77.6
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 6.0e-13 79.3 70 58.6
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 1.3e-12 78.2 49 73.5
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 1.7e-12 77.8 45 77.8
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 2.3e-12 77.4 49 73.5
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 2.3e-12 77.4 68 58.8
THA.LOC104808862 Tarenaya hassleriana HOM05D006931 ORTHO05D008782 2.3e-12 77.4 46 78.3
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 3.9e-12 76.6 49 69.4
Cfa014231 Carpinus fangiana HOM05D006931 ORTHO05D008782 6.6e-12 75.9 45 75.6
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 6.6e-12 75.9 45 75.6
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 8.6e-12 75.5 67 55.2
BolC1t02205H Brassica oleracea HOM05D016681 ORTHO05D015207 1.1e-11 75.1 70 50.0
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 1.5e-11 74.7 45 77.8
QL08p038506 Quercus lobata HOM05D016681 ORTHO05D015207 1.9e-11 74.3 79 45.6
HPP92_013549 Vanilla planifolia HOM05D006931 ORTHO05D008782 1.9e-11 74.3 71 50.7
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 3.3e-11 73.6 49 63.3
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 3.3e-11 73.6 45 73.3
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 3.3e-11 73.6 45 68.9
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 4.3e-11 73.2 47 70.2
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 4.3e-11 73.2 49 71.4
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 4.3e-11 73.2 49 71.4
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 9.5e-11 72.0 49 63.3
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 1.2e-10 71.6 49 65.3
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 1.2e-10 71.6 45 73.3
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 1.6e-10 71.2 49 65.3
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 1.6e-10 71.2 49 65.3
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 3.6e-10 70.1 45 73.3
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 4.7e-10 69.7 45 71.1
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 4.7e-10 69.7 49 63.3
Rhsim01G0200100 Rhododendron simsii HOM05D006931 ORTHO05D008782 4.7e-10 69.7 68 51.5
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 6.2e-10 69.3 45 71.1
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 6.2e-10 69.3 45 71.1
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 6.2e-10 69.3 45 71.1
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 6.2e-10 69.3 45 71.1
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 8.1e-10 68.9 45 71.1
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 8.1e-10 68.9 45 71.1
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 8.1e-10 68.9 49 67.3
Nitab4.5_0001701g0020 Nicotiana tabacum HOM05D006931 ORTHO05D008782 1.1e-09 68.6 45 71.1
Oeu052201.2 Olea europaea HOM05D006931 ORTHO05D008782 1.1e-09 68.6 45 73.3
Cfa014237 Carpinus fangiana HOM05D006931 ORTHO05D008782 1.4e-09 68.2 62 53.2
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.4e-09 68.2 66 53.0
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.4e-09 68.2 45 68.9
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.4e-09 68.2 62 54.8
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 2.3e-09 67.4 39 76.9
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 2.3e-09 67.4 70 52.9
MBI19_g25577_MAGBIO Magnolia biondii HOM05D016681 ORTHO05D015207 2.3e-09 67.4 73 43.8
Dinv21282 Davidia involucrata HOM05D006931 ORTHO05D028388 4.0e-09 66.6 41 75.6
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 4.0e-09 66.6 41 73.2
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 4.0e-09 66.6 66 51.5
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 5.2e-09 66.2 47 68.1
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 5.2e-09 66.2 45 68.9
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 6.8e-09 65.9 44 63.6
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 6.8e-09 65.9 45 68.9
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 6.8e-09 65.9 45 68.9
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 6.8e-09 65.9 45 68.9
CiPaw.03G280700 Carya illinoinensis HOM05D006931 ORTHO05D008782 6.8e-09 65.9 36 77.8
Lsat_1_v5_gn_2_33981 Lactuca sativa HOM05D001522 ORTHO05D008782 6.8e-09 65.9 49 59.2
Ca_23284_v3 Cicer arietinum L. HOM05D006931 ORTHO05D008782 8.9e-09 65.5 47 66.0
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 8.9e-09 65.5 45 68.9
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 1.2e-08 65.1 45 66.7
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 1.2e-08 65.1 45 66.7
Zm00001eb027640 Zea mays HOM05D006931 ORTHO05D008782 1.2e-08 65.1 46 58.7
Hma1.2p1_0253F.1_g103030 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.5e-08 64.7 46 65.2
Hma1.2p1_2484F.1_g323045 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.5e-08 64.7 46 65.2
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 2.0e-08 64.3 45 71.1
Migut.B01087 Erythranthe guttata HOM05D006931 ORTHO05D008782 2.0e-08 64.3 45 62.2
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 2.0e-08 64.3 38 71.1
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 2.0e-08 64.3 38 71.1
PGR142G3220 Punica granatum HOM05D006931 ORTHO05D008782 2.0e-08 64.3 46 60.9
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 2.0e-08 64.3 45 66.7
CSS0005617 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.6e-08 63.9 44 68.2
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 2.6e-08 63.9 39 76.9
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 2.6e-08 63.9 56 58.9
Phvul.010G143400 Phaseolus vulgaris HOM05D006931 ORTHO05D008782 2.6e-08 63.9 70 48.6
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 2.6e-08 63.9 70 48.6
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 4.4e-08 63.2 45 64.4
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 5.8e-08 62.8 49 57.1
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 5.8e-08 62.8 44 65.9
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 9.9e-08 62.0 49 55.1
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 1.7e-07 61.2 70 44.3
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 3.7e-07 60.1 39 66.7
AUR62017857 Chenopodium quinoa HOM05D006931 ORTHO05D008782 3.7e-07 60.1 39 66.7
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.7e-07 60.1 49 59.2
AUR62015178 Chenopodium quinoa HOM05D006931 ORTHO05D008782 4.9e-07 59.7 39 64.1
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 6.4e-07 59.3 42 61.9
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.2e-06 57.0 49 49.0
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 9.2e-06 55.5 33 78.8


User provided reference genes

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