Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 0.0e+00 1106.7 563 100.0
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.3e-180 637.1 549 63.9
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 2.5e-168 596.3 543 62.1
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.7e-162 576.2 546 60.3
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 2.3e-161 573.2 549 57.4
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 2.8e-159 566.2 549 56.5
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 1.0e-158 564.3 549 57.2
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 2.8e-156 556.2 554 54.9
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 7.0e-155 551.6 559 55.1
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 9.2e-155 551.2 462 65.2
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 6.1e-151 538.5 549 55.6
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 1.4e-150 537.3 553 55.7
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 8.9e-150 534.6 555 55.3
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 2.0e-149 533.5 546 55.5
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 2.0e-149 533.5 549 55.0
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 4.4e-149 532.3 549 55.2
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 2.9e-148 529.6 536 55.8
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 1.4e-147 527.3 553 53.9
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 6.0e-146 521.9 538 53.9
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 7.3e-144 515.0 543 54.7
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 2.8e-143 513.1 555 54.6
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 1.4e-142 510.8 546 55.5
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 4.9e-140 502.3 546 54.8
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 2.7e-138 496.5 546 54.2
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 1.3e-137 494.2 546 52.6
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 1.7e-137 493.8 544 52.6
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 2.3e-137 493.4 544 52.6
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 2.5e-136 490.0 546 52.0
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 7.3e-136 488.4 546 51.8
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 8.1e-135 485.0 545 52.7
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 2.3e-134 483.4 546 51.6
FAN01G0485 Fragaria x ananassa HOM05D004414 ORTHO05D001824 2.9e-132 476.5 545 51.9
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 7.1e-131 471.9 560 51.2
Glyma.04G141400 Glycine max HOM05D004414 ORTHO05D001824 3.4e-125 453.0 549 50.6
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 2.4e-123 446.8 546 50.2
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 1.6e-122 444.1 545 50.1
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 7.8e-122 441.8 545 47.7
VMungo1080G0433 Vigna mungo HOM05D004414 ORTHO05D001824 1.5e-120 437.6 550 49.3
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 5.6e-120 435.6 549 49.9
Phvul.005G029800 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 1.5e-117 427.6 549 49.0
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 2.0e-117 427.2 549 47.4
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 1.7e-116 424.1 547 48.3
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 1.7e-113 414.1 557 46.3
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 2.3e-113 413.7 542 48.0
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 6.6e-113 412.1 547 47.9
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 4.3e-112 409.5 564 46.6
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 1.6e-111 407.5 547 48.3
Phvul.011G209100 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 8.1e-111 405.2 550 45.6
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 1.1e-110 404.8 549 46.8
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 1.2e-109 401.4 543 47.3
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.2e-109 401.4 567 46.4
Lalb_Chr01g0007921 Lupinus albus HOM05D004414 ORTHO05D001824 1.5e-109 401.0 550 48.2
Psat5g217560 Pisum sativum HOM05D004414 ORTHO05D001824 3.8e-108 396.4 551 46.1
Actinidia19458 Actinidia chinensis HOM05D004414 ORTHO05D001824 5.1e-105 386.0 531 44.8
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 5.6e-104 382.5 570 43.0
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 1.6e-103 380.9 538 47.2
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 5.3e-102 375.9 556 42.8
Nn7g36611 Nelumbo nucifera HOM05D004414 ORTHO05D001824 7.6e-101 372.1 573 42.9
Nitab4.5_0002103g0040 Nicotiana tabacum HOM05D004414 ORTHO05D001824 2.7e-98 363.6 565 43.4
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 3.5e-98 363.2 560 43.6
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 7.9e-98 362.1 547 45.3
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 1.0e-97 361.7 570 42.1
Sopen01g030520 Solanum pennellii HOM05D004414 ORTHO05D001824 8.7e-97 358.6 556 43.5
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 2.5e-96 357.1 549 43.2
Potri.T126906 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.8e-93 345.9 353 55.5
Eucgr.J01191 Eucalyptus grandis HOM05D004414 ORTHO05D001824 1.0e-92 345.1 546 40.8
Rhsim07G0065500 Rhododendron simsii HOM05D004414 ORTHO05D001824 1.0e-92 345.1 557 42.7
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 3.0e-89 333.6 542 41.5
vmacro22979 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 1.1e-88 331.6 555 42.2
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 6.3e-87 325.9 468 46.4
CAN.G179.18 Capsicum annuum HOM05D004414 ORTHO05D001824 6.9e-86 322.4 556 40.5
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 9.4e-83 312.0 570 39.1
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 5.1e-81 306.2 542 40.0
SalBow5G0980 Salvia bowleyana HOM05D004414 ORTHO05D001824 1.3e-79 301.6 590 38.0
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 2.2e-79 300.8 545 40.0
Potri.T126406 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.4e-78 297.4 245 67.3
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 9.1e-78 295.4 561 37.8
SalBow5G2656 Salvia bowleyana HOM05D004414 ORTHO05D001824 2.2e-76 290.8 618 36.2
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 4.2e-75 286.6 541 38.4
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 4.2e-75 286.6 544 39.3
Aqoxy1G00343 Aquilegia oxysepala HOM05D004414 ORTHO05D001824 4.7e-74 283.1 580 37.4
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 6.1e-74 282.7 558 39.2
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 5.1e-73 279.6 544 38.2
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 3.3e-72 276.9 547 37.7
vmacro22867 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 7.4e-72 275.8 462 42.0
Migut.B01215 Erythranthe guttata HOM05D004414 ORTHO05D001824 9.1e-70 268.9 555 37.3
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 3.5e-69 266.9 554 37.0
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 3.8e-68 263.5 546 37.7
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 5.5e-67 259.6 546 37.9
Sed0019716 Sechium edule HOM05D004414 ORTHO05D001824 1.1e-64 251.9 386 45.1
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 9.7e-64 248.8 572 34.8
Cc00_g03090 Coffea canephora HOM05D004414 ORTHO05D001824 1.1e-62 245.4 312 44.9
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 1.4e-62 245.0 246 55.3
Potri.T126606 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.9e-61 239.6 177 74.0
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 1.3e-60 238.4 549 35.3
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 1.3e-60 238.4 549 35.3
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 7.2e-59 232.6 549 34.6
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 2.7e-58 230.7 549 34.6
PSO384G4230 Papaver somniferum HOM05D004414 ORTHO05D001824 2.0e-56 224.6 563 33.7
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 1.3e-55 221.9 589 33.6
Nitab4.5_0008169g0010 Nicotiana tabacum HOM05D004414 ORTHO05D001824 1.4e-54 218.4 400 40.2
Cpa.g.sc223.17 Carica papaya HOM05D004414 ORTHO05D001824 4.1e-54 216.9 201 58.2
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 9.1e-54 215.7 539 35.3
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 5.9e-53 213.0 543 34.4
COL.COLO4_09984 Corchorus olitorius HOM05D004414 ORTHO05D001824 2.2e-47 194.5 173 59.0
Peaxi162Scf00309g00418 Petunia axillaris HOM05D004414 ORTHO05D001824 2.0e-45 188.0 279 43.7
PSO339G3079 Papaver somniferum HOM05D004414 ORTHO05D001824 3.5e-45 187.2 504 33.3
DCAR_003244 Daucus carota HOM05D001375 ORTHO05D001222 5.9e-45 186.4 399 37.3
Ah.10g030650 Amaranthus hybridus HOM05D004414 ORTHO05D001824 2.1e-42 177.9 541 32.3
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 2.3e-41 174.5 570 30.7
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 8.3e-39 166.0 552 30.8
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 5.9e-37 159.8 561 29.1
Oeu056557.1 Olea europaea HOM05D004414 ORTHO05D001824 1.7e-36 158.3 344 34.9
COL.COLO4_09983 Corchorus olitorius HOM05D004414 ORTHO05D001824 1.9e-35 154.8 158 54.4
Zm00001eb132420 Zea mays HOM05D004414 ORTHO05D001824 3.6e-34 150.6 572 27.8
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 2.2e-31 141.4 615 27.8
Cc11_g01940 Coffea canephora HOM05D004414 ORTHO05D001824 1.4e-30 138.7 172 45.9
ECA248G3760 Erigeron canadensis HOM05D004414 ORTHO05D001824 2.4e-30 137.9 542 28.6
HPP92_013972 Vanilla planifolia HOM05D004414 ORTHO05D001824 1.2e-29 135.6 582 29.0
Ah.12g062930 Amaranthus hybridus HOM05D004414 ORTHO05D001824 3.5e-29 134.0 248 41.1
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 6.0e-29 133.3 596 29.2
Zm00001eb341790 Zea mays HOM05D004414 ORTHO05D001824 3.0e-28 131.0 568 25.9
BcaC07g39817 Brassica carinata HOM05D004414 ORTHO05D001824 4.3e-27 127.1 189 45.0
Cc00_g33900 Coffea canephora HOM05D004414 ORTHO05D001824 7.3e-27 126.3 154 48.1
SEGI_41395 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 1.8e-25 121.7 638 27.1
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 9.8e-24 115.9 596 28.5
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 1.7e-23 115.2 544 29.4
vmacro13744 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 6.4e-23 113.2 154 47.4
unitig_749.g13481 Utricularia gibba HOM05D004414 ORTHO05D001824 9.5e-19 99.4 198 38.9
CDE10G1254 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 3.6e-18 97.4 574 23.7
BolC8t50577H Brassica oleracea HOM05D004414 ORTHO05D001824 6.2e-18 96.7 159 41.5
C08p29680 Brassica napus HOM05D004414 ORTHO05D001824 5.8e-16 90.1 141 44.7
Ah.12g062920 Amaranthus hybridus HOM05D004414 ORTHO05D001824 4.9e-15 87.0 279 29.0
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 6.4e-15 86.7 602 25.6
HanXRQChr04g0095061 Helianthus annuus HOM05D004414 ORTHO05D001824 7.1e-14 83.2 194 34.5
TAR381G1495 Trochodendron aralioides HOM05D003662 ORTHO05D001824 4.6e-13 80.5 603 24.7
Medtr2g084520 Medicago truncatula HOM05D004414 ORTHO05D001824 3.0e-12 77.8 106 44.3
Peaxi162Scf00309g00414 Petunia axillaris HOM05D004414 ORTHO05D001824 2.5e-11 74.7 89 48.3
unitig_749.g13482 Utricularia gibba HOM05D005545 ORTHO05D006917 1.6e-10 72.0 140 36.4
Lsat_1_v5_gn_1_114861 Lactuca sativa HOM05D004414 ORTHO05D001824 3.6e-10 70.9 539 22.6
BcaC07g39818 Brassica carinata HOM05D004414 ORTHO05D001824 1.8e-09 68.6 92 44.6
Os01g0498200 Oryza sativa ssp. japonica HOM05D004414 ORTHO05D001824 3.1e-09 67.8 162 29.6
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 3.1e-09 67.8 560 24.5
Atru.chr6.854 Acer truncatum HOM05D003662 ORTHO05D001824 4.0e-09 67.4 423 24.3
Atru.chr6.858 Acer truncatum HOM05D003662 ORTHO05D001824 4.0e-09 67.4 423 24.3
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 6.8e-09 66.6 539 22.8
TAR628G0445 Trochodendron aralioides HOM05D003662 ORTHO05D001824 6.8e-09 66.6 585 24.4
C04p38010 Brassica napus HOM05D004414 ORTHO05D028135 3.4e-08 64.3 144 35.4
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 5.8e-08 63.5 280 26.1
MBI13_g30710_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 7.6e-08 63.2 75 45.3
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 9.9e-08 62.8 593 22.3
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 1.3e-07 62.4 594 23.7
BcaC02g09064 Brassica carinata HOM05D004414 ORTHO05D001824 1.7e-07 62.0 71 52.1
Mapoly0014s0165 Marchantia polymorpha HOM05D004414 ORTHO05D001824 2.2e-07 61.6 662 23.4
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 4.9e-07 60.5 593 22.6
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 4.9e-07 60.5 607 23.1
Lsat_1_v5_gn_9_117361 Lactuca sativa HOM05D003662 ORTHO05D001824 4.9e-07 60.5 292 25.7
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 6.4e-07 60.1 612 23.9
HPP92_012101 Vanilla planifolia HOM05D004414 ORTHO05D001824 6.4e-07 60.1 235 26.0
Lsat_1_v5_gn_5_107161 Lactuca sativa HOM05D003662 ORTHO05D001824 8.4e-07 59.7 230 26.1
Oeu056558.1 Olea europaea HOM05D004414 ORTHO05D001824 1.9e-06 58.5 59 55.9
HanXRQChr03g0066941 Helianthus annuus HOM05D003662 ORTHO05D001824 2.4e-06 58.2 223 27.8
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 3.2e-06 57.8 59 45.8
Gohir.D12G015200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.2e-06 57.8 584 22.1
Gorai.008G015300 Gossypium raimondii HOM05D003662 ORTHO05D001824 4.2e-06 57.4 589 22.1
SEGI_13704 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 4.2e-06 57.4 424 21.9
Dinv24197 Davidia involucrata HOM05D003662 ORTHO05D001824 5.4e-06 57.0 600 23.0
Lj5A240T38 Lonicera japonica HOM05D003662 ORTHO05D001824 5.4e-06 57.0 575 21.6
CDE10G0594 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 7.1e-06 56.6 108 42.6
Lj9A354G33 Lonicera japonica HOM05D003662 ORTHO05D001824 9.3e-06 56.2 222 27.0
Potri.001G205800 Populus trichocarpa HOM05D003662 ORTHO05D001824 9.3e-06 56.2 595 22.9


User provided reference genes

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