Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 2360.5 1109 100.0
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1929.8 1113 79.8
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1927.1 1116 79.1
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1876.7 1113 76.7
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1872.1 1118 77.6
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1869.7 1227 72.1
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1867.8 1117 76.4
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1862.8 1115 76.8
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1857.4 1117 75.7
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1855.9 1119 76.7
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1843.6 1111 75.3
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1842.8 1117 75.2
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1842.0 1117 75.3
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1840.9 1111 75.3
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1840.1 1112 75.4
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1839.3 1117 75.3
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1831.2 1117 75.6
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1823.1 1112 75.0
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1822.0 1119 75.4
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1815.0 1117 74.5
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1800.8 1113 73.8
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1800.8 1116 73.6
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1794.6 1122 73.4
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1776.1 1107 72.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1776.1 1117 73.3
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1771.5 1108 72.5
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1768.4 1116 71.5
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1765.7 1107 71.7
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1763.4 1109 71.9
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1763.0 1120 71.8
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1756.5 1107 71.6
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1754.6 1101 73.2
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1754.2 1107 71.6
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1754.2 1107 71.7
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1753.8 1100 71.8
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1753.0 1117 72.2
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1750.3 1102 71.8
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1748.8 1107 71.5
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1745.3 1115 71.6
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1742.2 1100 71.8
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1741.5 1106 72.0
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1741.1 1110 71.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1740.3 1069 74.6
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1739.5 1111 72.5
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1734.5 1124 71.2
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1728.4 1114 70.8
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1727.2 1105 70.9
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1723.8 1114 69.8
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1721.8 1113 71.2
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1718.7 1121 69.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1717.6 1113 69.7
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1717.2 1107 70.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1717.2 1105 70.5
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1716.8 1110 71.2
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1716.4 1116 70.1
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1714.9 1114 70.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1713.7 1097 71.6
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1709.5 1114 70.0
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1704.9 1116 70.3
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1701.8 1115 68.7
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1699.9 1114 69.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1698.3 1106 70.2
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1698.3 1112 68.6
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1697.6 1112 68.9
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1695.2 1115 71.1
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1687.2 1121 68.7
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1685.6 1105 69.6
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1105 69.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1677.9 1067 72.2
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1677.1 1124 68.7
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1676.0 1110 68.7
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1671.4 1098 69.6
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1667.9 993 77.8
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1660.2 1075 70.8
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1065 71.0
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1630.9 1124 65.7
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1625.5 1114 67.0
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1622.8 1138 65.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1120 66.7
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1097 66.7
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1089 68.5
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1576.2 1114 65.1
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1558.9 1159 63.7
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1555.8 991 72.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1552.0 1106 63.7
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1494.9 900 76.7
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1493.8 919 74.5
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1486.1 1081 63.0
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1313.5 1136 53.5
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1310.4 835 73.4
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1305.0 1036 59.3
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1291.9 1104 55.2
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1286.6 834 71.5
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1256.5 1108 54.0
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1240.3 751 75.1
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1184.1 741 72.7
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1181.8 756 71.8
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1171.8 1130 49.6
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1150.6 667 78.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 3.7e-309 1065.1 1133 47.6
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.4e-301 1037.7 691 70.5
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.2e-262 910.6 730 60.0
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.3e-240 837.4 497 76.9
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.7e-218 761.9 570 61.2
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 2.4e-215 753.4 527 66.6
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.9e-214 748.8 527 66.6
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 4.2e-159 566.6 1342 31.0
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 2.4e-154 550.8 385 66.5
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 6.6e-149 532.7 608 46.2
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.1e-138 498.8 284 79.6
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.0e-125 455.7 1109 30.9
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 6.5e-120 436.4 240 80.8
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.1e-111 409.1 272 70.2
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 3.0e-109 401.0 599 40.2
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 6.3e-91 340.1 197 76.1
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 2.1e-86 325.1 201 73.6
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 6.3e-83 313.5 174 82.8
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.1e-82 312.8 259 56.0
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 4.7e-78 297.4 208 66.3
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.3e-67 262.7 156 73.7
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.0e-64 250.8 210 55.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.1e-63 249.6 164 72.6
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 4.3e-63 247.7 130 80.8
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 2.1e-49 202.2 123 72.4
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 3.1e-45 188.3 124 73.4
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 2.4e-37 162.2 123 61.8
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 9.9e-36 156.8 175 45.7
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.9e-35 155.2 138 50.7
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.4e-34 152.1 105 61.0
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-32 146.4 68 89.7
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 6.6e-32 144.1 84 75.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 6.6e-32 144.1 69 87.0
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-31 142.9 68 88.2
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 2.1e-30 139.0 82 72.0
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 4.8e-30 137.9 98 67.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.4e-29 136.3 156 48.7
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.1e-26 126.7 75 70.7
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 4.6e-25 121.3 141 47.5
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 4.3e-23 114.8 66 74.2
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 5.8e-20 104.4 53 81.1
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.0e-19 103.6 118 49.2
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 3.2e-18 98.6 99 48.5
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 5.5e-18 97.8 100 49.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 7.1e-18 97.4 86 53.5
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 6.0e-17 94.4 45 84.4
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 6.0e-17 94.4 45 84.4
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.9e-16 91.7 45 84.4
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 8.7e-16 90.5 88 50.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 3.3e-15 88.6 45 80.0
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 9.0e-13 80.5 50 68.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 9.0e-13 80.5 136 39.0
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 3.9e-08 65.1 376 22.9
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 5.1e-08 64.7 61 50.8


User provided reference genes

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