Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 5.7e-95 350.9 177 100.0
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.6e-89 332.8 177 93.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.6e-81 306.2 177 84.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.6e-81 306.2 177 87.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.4e-80 303.1 177 87.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 6.8e-80 300.8 177 83.6
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.5e-79 299.7 177 85.3
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.2e-78 295.8 177 84.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-77 293.5 180 82.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.1e-77 293.5 177 84.2
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.8e-77 292.7 177 84.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 4.1e-77 291.6 177 83.6
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 4.1e-77 291.6 179 84.4
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.4e-77 291.2 177 83.6
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 9.2e-77 290.4 179 81.6
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 3.5e-76 288.5 166 84.9
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 4.5e-76 288.1 177 82.5
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 5.9e-76 287.7 172 81.4
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 7.8e-76 287.3 177 81.4
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-75 286.2 177 81.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.7e-75 286.2 179 80.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 3.9e-75 285.0 177 78.5
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.9e-75 285.0 179 80.4
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.0e-75 284.6 179 80.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.5e-74 283.1 179 80.4
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.3e-74 282.0 176 82.4
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 4.3e-74 281.6 178 79.8
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 5.6e-74 281.2 182 80.2
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 9.5e-74 280.4 177 78.0
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 9.5e-74 280.4 177 81.9
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-73 279.3 178 78.7
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.1e-73 279.3 178 80.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.8e-73 278.9 174 82.2
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.6e-73 278.5 175 80.6
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.7e-73 278.1 179 79.3
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.4e-72 276.6 175 80.0
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.4e-72 276.6 175 80.0
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.4e-72 276.6 176 79.0
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.3e-72 275.8 180 78.3
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.3e-72 275.8 180 78.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 2.3e-72 275.8 179 78.8
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 3.1e-72 275.4 178 81.5
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.1e-72 275.4 177 81.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.0e-72 275.0 178 79.2
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.2e-72 274.6 177 76.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 6.8e-72 274.2 178 79.2
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 6.8e-72 274.2 179 78.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 6.8e-72 274.2 178 79.8
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.9e-72 273.9 175 79.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 8.9e-72 273.9 176 77.8
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.6e-71 272.3 177 78.0
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.4e-71 271.6 179 78.8
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.4e-71 271.6 179 78.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 9.8e-71 270.4 177 79.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.3e-70 270.0 178 78.1
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.3e-70 270.0 175 78.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.7e-70 269.6 181 76.8
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.7e-70 268.5 180 77.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.9e-70 268.1 186 78.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.4e-70 267.7 180 77.2
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 8.3e-70 267.3 177 76.3
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 8.3e-70 267.3 177 76.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 8.3e-70 267.3 177 79.7
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 8.3e-70 267.3 178 78.7
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 176 77.8
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.4e-69 266.5 177 75.7
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.4e-69 266.5 186 76.9
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.9e-69 266.2 177 75.7
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-69 266.2 177 75.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.2e-69 265.4 181 74.0
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 7.0e-69 264.2 178 76.4
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 7.0e-69 264.2 165 80.0
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 9.2e-69 263.8 174 79.3
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-68 263.5 173 78.0
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.2e-68 263.5 186 76.9
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.2e-68 263.5 186 76.9
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.6e-68 263.1 172 76.7
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.0e-68 262.7 186 76.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.5e-68 261.9 183 73.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 4.6e-68 261.5 186 75.8
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 7.8e-68 260.8 179 75.4
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.0e-67 260.4 177 74.6
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.0e-67 260.4 178 74.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.0e-67 260.4 179 75.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.0e-67 258.8 179 74.3
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.0e-67 258.8 179 74.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.0e-67 258.8 178 74.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 8.6e-67 257.3 182 72.5
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 8.6e-67 257.3 179 74.9
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.3e-66 254.2 194 69.6
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 9.5e-66 253.8 182 72.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 9.5e-66 253.8 181 73.5
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 9.5e-66 253.8 177 74.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.8e-65 252.3 177 74.0
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.8e-65 252.3 180 72.2
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.6e-65 251.9 176 73.9
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.2e-65 251.1 181 71.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 8.0e-65 250.8 182 71.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.4e-64 250.0 175 70.9
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 3.1e-64 248.8 172 70.9
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.8e-64 247.7 179 72.1
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.0e-63 246.1 178 72.5
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.6e-63 245.7 178 71.3
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.6e-63 245.7 178 71.9
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.4e-63 245.4 179 70.4
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.4e-63 245.0 182 70.3
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 70.2
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 5.8e-63 244.6 180 71.1
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 9.8e-63 243.8 185 71.9
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 9.8e-63 243.8 177 71.2
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.9e-61 239.6 182 69.2
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.9e-61 239.6 179 69.3
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.9e-61 239.6 152 75.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.4e-61 239.2 167 71.9
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.1e-61 237.7 178 70.8
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.1e-61 237.7 179 71.5
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.1e-61 237.7 176 69.9
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.1e-60 236.1 179 70.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.7e-60 235.7 247 54.7
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 6.0e-60 234.6 175 69.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.3e-59 232.6 174 68.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.0e-59 232.3 173 71.1
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-58 229.6 151 74.8
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.2e-57 226.9 180 67.8
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 8.1e-57 224.2 172 66.9
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.4e-56 223.4 170 67.1
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.0e-56 221.9 157 74.5
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.0e-56 221.9 194 63.4
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 6.8e-56 221.1 179 65.4
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.5e-55 219.9 158 72.2
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 7.1e-53 211.1 121 83.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.0e-51 205.7 179 63.1
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 7.6e-47 191.0 179 55.9
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.9e-46 189.1 143 60.8
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.1e-45 187.2 185 57.3
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.4e-45 186.8 194 57.7
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.4e-45 186.0 150 62.7
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 9.3e-45 184.1 156 59.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 9.6e-42 174.1 166 55.4
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.3e-40 168.3 89 86.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-38 163.7 176 54.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-37 160.6 86 86.0
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.0e-36 154.8 86 81.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 6.6e-35 151.4 175 49.7
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 4.3e-34 148.7 130 64.6
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.1e-33 146.4 112 71.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 2.8e-33 146.0 89 79.8
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 6.2e-33 144.8 118 69.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 3.8e-30 135.6 129 59.7
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 6.4e-30 134.8 118 61.9
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 3.1e-24 115.9 91 69.2
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.2e-23 114.0 127 48.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.5e-23 113.6 118 45.8
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.5e-23 112.1 91 68.1
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.5e-23 112.1 91 68.1
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.6e-20 103.6 85 65.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 7.9e-20 101.3 105 43.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 3.0e-19 99.4 140 40.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.7e-17 92.4 46 91.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.2e-13 79.0 80 53.8
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.7e-12 76.3 65 60.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.8e-11 73.6 97 39.2
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 4.3e-10 68.9 85 45.9
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-09 67.0 142 35.9
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.3e-09 65.1 70 52.9


User provided reference genes

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