Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.6e-184 648.7 351 100.0
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 2.6e-131 472.6 350 74.3
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.8e-93 346.3 319 67.4
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.1e-89 334.3 320 65.6
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.2e-89 332.8 320 65.3
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 3.2e-89 332.8 320 65.3
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 4.2e-89 332.4 347 62.2
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 5.4e-89 332.0 300 66.3
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 5.4e-89 332.0 332 61.1
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 9.3e-89 331.3 289 70.2
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.1e-88 330.1 329 61.4
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 6.0e-88 328.6 300 67.3
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.3e-87 327.4 323 61.6
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 1.8e-87 327.0 314 63.7
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 5.1e-87 325.5 292 68.8
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 2.5e-86 323.2 351 58.7
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 5.3e-84 315.5 285 64.9
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 6.9e-84 315.1 325 62.5
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.8e-83 312.0 330 60.0
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 5.8e-83 312.0 352 56.8
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.0e-82 311.2 330 59.1
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 2.2e-82 310.1 384 56.0
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 1.1e-81 307.8 264 71.6
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 1.3e-79 300.8 348 59.2
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 9.6e-78 294.7 321 58.3
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 9.6e-78 294.7 259 68.7
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 3.7e-77 292.7 313 57.2
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 8.2e-77 291.6 313 57.2
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 1.4e-76 290.8 377 53.3
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.5e-75 287.3 331 58.0
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 3.4e-75 286.2 248 70.6
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 5.8e-75 285.4 331 52.9
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.9e-73 280.4 268 64.9
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.6e-72 277.3 336 57.7
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-72 277.3 327 56.6
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.6e-72 277.3 323 56.3
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 4.6e-72 275.8 318 54.7
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 7.9e-72 275.0 185 76.8
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.3e-71 274.2 270 63.3
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.3e-71 274.2 346 53.5
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-71 273.9 321 56.4
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.8e-71 273.9 345 53.6
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 8.7e-71 271.6 176 78.4
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.1e-70 271.2 322 52.8
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 2.5e-70 270.0 166 81.9
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.3e-69 267.7 338 54.4
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 2.2e-69 266.9 318 57.5
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.2e-69 266.9 260 61.5
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.7e-69 266.2 325 56.9
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 4.8e-69 265.8 332 56.0
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 4.8e-69 265.8 310 57.4
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.4e-68 263.5 366 50.3
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 5.3e-68 262.3 327 51.7
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 5.3e-68 262.3 324 54.0
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 4.5e-67 259.2 325 53.8
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 4.5e-67 259.2 318 56.0
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.3e-66 257.7 317 55.2
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.3e-66 257.7 317 55.2
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.3e-66 257.7 317 55.2
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.3e-66 257.7 185 72.4
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 6.5e-66 255.4 270 58.5
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 8.5e-66 255.0 322 55.0
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 4.2e-65 252.7 330 52.1
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 4.2e-65 252.7 318 50.9
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 5.5e-65 252.3 178 73.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 7.2e-65 251.9 234 62.4
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 3.0e-63 246.5 272 58.8
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 3.9e-63 246.1 315 55.9
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.9e-63 246.1 331 51.7
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 5.1e-63 245.7 350 49.4
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 8.8e-63 245.0 166 76.5
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.5e-62 244.2 188 70.2
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.5e-62 244.2 188 70.2
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.0e-62 243.8 190 69.5
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.5e-62 243.4 249 62.2
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.7e-62 242.3 164 78.7
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 4.8e-61 239.2 181 71.8
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 4.8e-61 239.2 318 54.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.4e-60 237.7 288 51.7
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 2.4e-60 236.9 174 75.3
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 9.1e-60 235.0 167 73.1
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 1.5e-59 234.2 149 79.9
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.6e-59 233.4 167 73.1
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 4.5e-59 232.6 253 59.3
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.3e-58 231.1 181 71.3
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.7e-58 230.7 279 56.6
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 1.7e-58 230.7 170 72.9
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 5.0e-58 229.2 241 56.8
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 5.0e-58 229.2 173 73.4
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 4.2e-57 226.1 174 71.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 8.8e-55 218.4 224 63.4
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 2.0e-54 217.2 157 73.2
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.2e-53 213.8 282 51.4
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 3.7e-53 213.0 164 68.9
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 2.6e-51 206.8 388 43.8
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.3e-50 204.5 313 48.6
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 4.2e-49 199.5 160 65.0
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 7.2e-49 198.7 125 78.4
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 6.7e-47 192.2 159 62.9
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.1e-46 191.4 143 70.6
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.1e-46 191.4 143 70.6
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 9.7e-46 188.3 160 62.5
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.8e-45 186.8 219 55.7
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 2.6e-43 180.3 162 60.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 7.7e-43 178.7 124 75.0
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 6.5e-42 175.6 210 56.2
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 2.0e-35 154.1 124 67.7
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 2.5e-33 147.1 107 73.8
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 8.3e-29 132.1 71 91.5
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-27 128.3 107 67.3
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 2.0e-27 127.5 173 48.0
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 4.5e-27 126.3 197 40.6
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.2e-24 118.2 160 43.1
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-23 114.4 105 61.9
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 8.9e-23 112.1 64 89.1
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 3.7e-21 106.7 204 44.6
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 3.2e-20 103.6 76 72.4
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 2.5e-17 94.0 149 40.9
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.5e-14 84.7 109 49.5
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 2.2e-13 80.9 158 43.0
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.9e-12 77.8 61 63.9
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.4e-12 77.4 40 92.5
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 7.0e-12 75.9 39 92.3
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-11 75.1 78 59.0
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 1.1e-09 68.6 173 41.0
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 4.7e-08 63.2 96 43.8
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.1e-07 60.5 117 46.2
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 1.2e-06 58.5 66 51.5


User provided reference genes

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