Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 6.3e-137 490.7 243 100.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.1e-99 365.5 240 74.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.0e-98 362.8 242 74.0
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.4e-96 355.9 232 72.4
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.1e-95 352.8 230 72.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.1e-95 352.8 230 73.0
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.1e-95 352.8 240 72.1
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.1e-95 352.8 241 70.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.3e-94 350.1 240 73.3
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.9e-93 346.3 237 69.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.3e-93 345.1 237 69.2
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 4.3e-93 345.1 240 71.2
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 7.3e-93 344.4 233 67.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.6e-92 343.2 240 69.2
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.6e-92 343.2 241 68.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.8e-92 342.4 240 70.8
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.1e-91 340.5 230 71.7
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-91 340.5 242 68.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 9.0e-91 337.4 241 67.2
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.9e-89 332.4 230 68.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.4e-88 329.3 235 68.5
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-87 327.0 230 67.4
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 9.6e-85 317.4 233 65.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.8e-84 315.8 233 65.7
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 6.2e-84 314.7 241 62.2
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 6.2e-84 314.7 233 65.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.1e-84 314.3 233 63.9
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.4e-83 312.8 241 61.8
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.9e-83 311.2 232 65.1
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.6e-82 307.8 230 60.9
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.1e-80 303.9 232 63.4
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.1e-80 303.9 230 62.6
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 5.5e-80 301.6 200 69.5
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.6e-79 300.1 231 62.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 6.0e-79 298.1 231 62.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.0e-78 297.4 225 64.0
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 3.0e-78 295.8 232 62.1
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.0e-78 295.8 231 63.6
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.0e-78 295.8 231 64.1
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 3.3e-77 292.4 211 71.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.3e-77 292.4 230 59.6
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 8.2e-76 287.7 230 60.9
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.8e-75 286.6 234 59.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 9.0e-75 284.3 246 58.5
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.5e-74 283.5 227 62.1
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.0e-74 283.1 233 57.9
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 5.8e-74 281.6 234 58.1
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-73 280.4 234 59.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.8e-73 278.9 237 57.0
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 4.9e-73 278.5 234 58.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 6.5e-73 278.1 234 58.5
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 6.5e-73 278.1 234 58.5
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.5e-73 278.1 246 57.3
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-72 277.3 230 59.1
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.9e-72 276.6 244 57.8
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.9e-72 276.6 230 59.1
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-72 275.4 230 58.7
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-72 275.4 230 58.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.2e-72 275.4 232 58.2
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 7.1e-72 274.6 228 55.3
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.1e-72 274.6 223 59.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-71 273.9 229 57.6
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 3.5e-71 272.3 233 54.5
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.1e-71 271.6 229 57.6
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.0e-70 270.8 242 56.2
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 5.1e-70 268.5 236 55.9
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 2.5e-69 266.2 231 56.3
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-69 265.8 231 56.3
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-69 265.8 231 55.4
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.2e-68 263.1 229 57.6
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.8e-68 262.7 229 55.0
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.9e-67 258.1 231 55.0
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.2e-66 257.3 234 55.6
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.5e-66 256.9 232 54.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.5e-66 256.9 238 52.1
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.5e-66 256.9 200 60.5
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.6e-66 256.1 242 51.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.4e-66 255.8 237 51.9
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.4e-66 255.8 215 59.1
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.2e-65 253.1 225 54.2
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.9e-65 252.7 240 55.0
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.9e-65 252.7 230 55.2
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 5.0e-65 251.9 237 54.0
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 3.2e-64 249.2 230 51.7
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.2e-64 249.2 230 54.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.2e-64 249.2 234 52.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.2e-64 248.8 239 51.0
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 5.5e-64 248.4 241 53.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.5e-64 248.4 231 56.3
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 9.4e-64 247.7 228 52.6
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.1e-63 246.5 227 52.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.0e-62 244.2 238 52.1
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 3.0e-62 242.7 237 52.3
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 6.7e-62 241.5 231 52.8
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 8.8e-62 241.1 228 51.3
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 8.8e-62 241.1 200 58.5
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.1e-61 240.7 197 59.9
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 9.7e-61 237.7 231 51.1
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.7e-60 236.9 242 52.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.5e-58 230.3 232 48.3
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.4e-58 229.2 154 68.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.7e-57 226.9 240 46.7
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 8.5e-57 224.6 232 47.0
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 8.5e-57 224.6 232 47.0
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.1e-56 224.2 154 63.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.4e-56 223.8 239 47.7
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.5e-56 223.0 232 46.1
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 3.2e-56 222.6 233 47.6
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 3.2e-56 222.6 232 46.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 3.2e-56 222.6 232 46.1
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.2e-56 222.6 234 49.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 4.2e-56 222.2 235 51.1
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 7.2e-56 221.5 232 49.1
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 9.4e-56 221.1 238 44.5
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.2e-55 220.7 233 49.4
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.1e-55 219.9 234 47.4
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.6e-55 219.2 232 50.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 7.9e-55 218.0 229 49.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 3.9e-54 215.7 233 48.1
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.8e-54 214.5 207 52.7
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.1e-53 214.2 217 48.4
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-53 214.2 231 50.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.4e-53 212.2 207 52.2
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 5.7e-53 211.8 194 54.6
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.3e-52 210.7 233 45.9
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.8e-51 206.8 222 46.4
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 5.3e-51 205.3 235 47.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 7.0e-51 204.9 235 46.0
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.0e-50 203.4 234 45.3
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 4.5e-50 202.2 231 43.7
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.0e-49 201.1 208 50.0
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-49 199.9 232 44.8
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.9e-49 199.5 235 46.8
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.9e-49 199.5 219 44.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.5e-48 197.2 231 42.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.7e-47 192.2 155 59.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.4e-46 190.7 230 43.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.8e-46 190.3 214 41.6
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 5.2e-46 188.7 152 58.6
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 6.7e-46 188.3 230 39.1
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 8.8e-46 188.0 236 44.9
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 8.8e-46 188.0 236 44.9
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-45 187.2 178 51.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 7.4e-45 184.9 186 50.0
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 7.4e-45 184.9 228 40.4
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.8e-44 182.2 165 53.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.1e-43 179.5 147 57.1
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 9.1e-43 177.9 234 43.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 9.1e-43 177.9 122 69.7
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-42 177.6 207 49.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 5.9e-42 175.3 164 54.3
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 8.5e-41 171.4 117 68.4
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.5e-40 169.9 145 56.6
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.3e-38 163.3 117 65.8
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.2e-37 161.0 227 36.6
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.5e-37 160.6 236 35.6
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 4.4e-37 159.1 238 36.1
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 5.3e-35 152.1 191 38.2
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-34 151.0 199 45.2
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.4e-30 137.5 201 45.3
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.5e-29 134.0 139 46.8
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.7e-26 121.7 141 48.9
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 7.7e-26 121.7 88 62.5
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.0e-25 121.3 91 64.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.5e-24 117.5 131 51.9
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.5e-24 116.7 92 58.7
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.2e-24 115.9 213 35.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.2e-23 114.4 80 66.2
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.0e-22 109.4 125 45.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 8.9e-22 108.2 78 60.3
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.7e-20 104.0 92 52.2
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.9e-16 90.5 170 31.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 7.3e-16 88.6 80 50.0
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-15 87.8 101 42.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 2.1e-15 87.0 100 43.0
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 6.8e-14 82.0 57 64.9
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.1e-11 74.7 54 57.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.1e-11 74.7 78 42.3
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-11 74.3 99 37.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.2e-10 71.2 87 46.0
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.1e-06 58.2 53 56.6
Medtr7g109760 Medicago truncatula HOM05D003762 ORTHO05D004374 4.0e-06 56.2 156 28.2
Thecc.03G134500 Theobroma cacao HOM05D003762 ORTHO05D004374 6.8e-06 55.5 45 60.0


User provided reference genes

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