Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.5e-155 552.0 266 100.0
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 4.6e-96 355.1 263 65.4
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 4.6e-96 355.1 267 65.2
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.8e-92 343.2 266 59.8
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 3.7e-90 335.5 267 61.4
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 6.4e-90 334.7 266 60.9
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 9.2e-89 330.9 266 60.9
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 6.6e-87 324.7 267 56.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-84 317.4 254 62.2
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 6.8e-84 314.7 266 56.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.3e-82 310.5 266 56.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.9e-82 309.3 268 56.3
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 4.9e-82 308.5 271 57.9
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.4e-81 307.0 268 57.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.4e-81 306.2 264 57.2
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 9.2e-81 304.3 266 55.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.2e-80 303.9 268 57.8
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.5e-80 302.4 264 56.8
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.0e-79 300.8 269 54.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-79 300.4 269 54.6
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.0e-79 299.3 270 55.6
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.9e-79 298.9 268 55.6
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.1e-79 298.5 275 54.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 6.6e-79 298.1 269 54.3
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 8.6e-79 297.7 263 55.1
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.1e-78 297.4 253 56.9
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.3e-78 295.4 269 56.1
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 7.3e-78 294.7 267 55.1
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.7e-77 292.0 269 53.5
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.1e-76 290.8 267 54.3
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 3.1e-76 289.3 269 54.3
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 3.1e-76 289.3 266 53.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 6.8e-76 288.1 270 54.8
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 8.9e-76 287.7 258 57.0
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.5e-75 287.0 270 54.8
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.5e-75 287.0 255 54.9
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 3.4e-75 285.8 257 54.5
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.4e-75 285.4 269 52.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 5.8e-75 285.0 268 55.2
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.3e-74 283.9 268 53.0
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.9e-74 282.0 269 53.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 4.9e-74 282.0 248 54.0
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 4.9e-74 282.0 267 53.6
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 6.4e-74 281.6 268 53.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.1e-73 280.8 268 53.4
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.4e-73 280.4 271 54.2
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.4e-73 280.4 270 54.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.9e-73 280.0 248 53.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.2e-73 279.3 271 54.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.2e-72 277.3 268 52.6
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.6e-72 276.9 268 53.7
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.7e-72 276.2 268 52.6
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 2.7e-72 276.2 271 52.8
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.5e-72 275.8 255 53.3
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.3e-71 273.9 268 52.2
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 2.3e-71 273.1 269 51.3
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-71 273.1 268 52.2
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.3e-71 273.1 212 60.4
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 5.1e-71 271.9 252 54.0
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 6.6e-71 271.6 267 51.7
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 8.6e-71 271.2 235 54.9
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.6e-71 271.2 268 52.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.3e-70 269.2 266 51.1
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 4.3e-70 268.9 266 49.6
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.3e-70 268.1 253 51.4
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 9.6e-70 267.7 268 51.9
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.2e-69 267.3 266 51.9
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.8e-69 266.2 232 56.5
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.6e-69 265.8 268 51.1
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 5.2e-68 261.9 251 52.6
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 9.0e-68 261.2 275 51.3
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 9.0e-68 261.2 262 51.9
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.5e-67 260.4 267 49.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.8e-67 258.5 267 49.4
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 5.8e-67 258.5 274 51.1
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 5.8e-67 258.5 256 52.0
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 5.8e-67 258.5 259 51.4
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 9.9e-67 257.7 267 49.4
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.7e-66 256.9 266 48.9
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.9e-66 256.1 254 50.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.8e-66 255.8 249 51.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.4e-66 255.0 267 48.3
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 8.4e-66 254.6 270 49.3
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.4e-65 253.8 265 48.3
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.9e-65 253.4 267 47.6
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.9e-65 253.4 234 51.7
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.9e-65 253.4 252 52.4
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.2e-65 252.7 214 57.9
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.2e-65 252.3 266 48.5
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.2e-65 252.3 266 48.5
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.2e-65 252.3 266 48.5
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.4e-65 251.9 267 47.2
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 9.3e-65 251.1 268 48.5
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.2e-64 250.8 288 45.5
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.2e-64 250.8 232 50.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.1e-64 250.0 255 47.5
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 2.1e-64 250.0 275 50.2
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 4.6e-64 248.8 269 48.0
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 4.6e-64 248.8 269 48.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.0e-64 248.4 253 51.0
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.8e-64 248.1 201 58.7
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 7.8e-64 248.1 269 48.0
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 2.3e-63 246.5 226 54.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 3.9e-63 245.7 251 48.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.1e-63 245.4 253 50.6
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.5e-62 243.0 251 48.6
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 5.6e-62 241.9 268 47.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 5.6e-62 241.9 268 47.0
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.6e-62 241.1 268 46.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.6e-61 240.4 217 56.2
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.8e-61 238.8 225 51.1
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 8.1e-61 238.0 269 45.7
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 4.0e-60 235.7 225 53.3
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-59 233.8 268 46.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.5e-59 233.8 234 46.2
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.6e-59 233.0 289 43.3
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 2.6e-59 233.0 265 45.3
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 4.5e-59 232.3 192 59.4
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.3e-58 230.7 245 49.0
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.9e-58 229.6 252 46.0
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.4e-58 228.0 293 45.1
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.1e-57 227.6 312 40.1
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.9e-57 226.9 270 46.7
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.4e-57 226.5 204 53.9
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-56 224.2 222 48.2
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 2.7e-56 223.0 219 48.9
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.5e-56 222.6 215 52.1
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 6.0e-56 221.9 255 46.7
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 6.0e-56 221.9 240 45.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.0e-55 221.1 215 51.2
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 5.1e-55 218.8 286 43.7
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.1e-54 217.6 213 48.8
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.1e-54 217.6 275 41.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.3e-54 216.1 270 43.7
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.6e-54 214.5 214 48.1
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.3e-53 214.2 236 48.3
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.8e-53 213.0 266 43.6
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 3.1e-52 209.5 286 42.7
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.0e-52 209.1 180 53.9
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.2e-48 197.6 181 53.6
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.0e-47 193.0 173 52.0
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 6.7e-47 191.8 241 41.5
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.1e-46 191.0 268 40.7
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 7.4e-46 188.3 162 54.9
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 7.4e-46 188.3 312 37.5
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.1e-44 184.5 266 41.0
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.4e-43 179.5 181 50.8
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.2e-42 176.8 234 42.3
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 2.9e-42 176.4 184 47.8
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 4.6e-40 169.1 252 37.7
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.3e-37 161.0 224 39.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 2.8e-37 159.8 170 44.7
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.8e-37 159.8 152 53.3
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.4e-36 157.5 239 39.7
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.4e-36 156.8 223 40.4
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.3e-36 155.6 182 47.8
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 3.8e-34 149.4 220 41.4
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.1e-33 147.9 125 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.5e-33 146.7 302 31.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.3e-31 140.2 320 28.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.7e-30 135.6 133 50.4
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.2e-29 133.7 240 35.4
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 4.8e-29 132.5 266 33.8
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 8.2e-29 131.7 219 36.1
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.8e-28 130.6 265 34.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 5.0e-26 122.5 259 35.1
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.1e-25 121.3 138 44.9
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 3.2e-25 119.8 166 41.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.7e-24 115.9 81 65.4
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 5.7e-22 109.0 84 58.3
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 3.1e-20 103.2 74 59.5
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-20 102.8 197 35.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-17 94.7 119 43.7
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.7e-16 90.1 87 51.7
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 4.7e-16 89.4 62 59.7
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.3e-15 87.0 132 37.9
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-14 84.3 147 34.0
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.0e-14 84.0 79 51.9
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.2e-11 74.7 144 36.1
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.7e-10 70.9 135 36.3
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.2e-10 70.5 67 49.3
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 5.5e-09 65.9 46 65.2
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-08 63.5 43 60.5
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.0e-07 61.6 64 50.0
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.3e-07 60.5 44 59.1
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.0e-06 57.4 66 47.0


User provided reference genes

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