Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 3829.6 1975 100.0
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2722.6 1975 70.2
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2623.2 2075 66.1
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2500.7 2061 63.6
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2499.2 1983 65.4
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2499.2 1984 65.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2491.1 1982 64.9
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2481.4 1972 65.3
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2427.1 1973 63.6
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2421.4 1986 63.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2404.4 1981 64.3
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2395.9 1982 63.2
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2372.0 1986 62.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2366.3 1973 62.4
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2358.2 2008 61.7
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2353.9 1984 61.7
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2348.5 1982 61.8
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2335.5 1980 62.1
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2325.1 1976 61.7
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2306.6 1978 61.5
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2301.2 1978 61.2
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2275.0 1992 60.1
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2241.5 2187 55.8
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2239.2 2005 58.9
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 2206.0 1985 58.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2192.5 1792 63.4
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2186.8 1977 58.2
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2159.0 2006 57.7
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2153.3 1987 57.5
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 2137.5 1977 56.7
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 2135.9 1983 57.0
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2133.6 1980 56.7
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2129.8 1978 56.8
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2119.0 1984 56.5
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2110.9 2065 54.7
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 2095.1 1986 55.8
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2091.6 1984 56.5
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 2087.8 1982 56.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2073.5 1983 55.4
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 2065.8 1981 55.7
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2060.4 1993 55.6
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2060.0 2076 53.6
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 2056.2 1982 55.8
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 2054.3 1973 55.0
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 2054.3 1978 55.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2053.9 1993 55.5
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 2044.2 1978 55.3
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2038.8 1983 54.8
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2036.2 2038 53.6
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2017.3 1982 54.7
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 2009.6 1984 54.4
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 2008.4 1987 54.4
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2003.0 1986 53.9
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1999.9 1984 54.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1998.0 1987 54.2
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1978.0 1981 52.5
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1955.6 1981 53.2
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1951.8 2005 52.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1941.4 1978 53.0
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1932.5 2095 50.7
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1932.5 1988 52.9
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1910.2 2022 52.4
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1909.0 2026 51.6
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1903.6 1974 52.7
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1892.1 1948 52.2
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1890.2 2028 51.5
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1886.3 1990 51.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1879.8 2180 48.2
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1851.3 1979 52.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1839.7 1975 51.2
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1825.1 1746 56.3
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1807.0 1836 52.2
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1805.4 1992 51.2
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1805.0 1979 49.9
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1617.1 2000 45.6
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1592.4 1395 60.6
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1571.6 1501 57.5
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1550.4 1981 45.7
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1444.1 1388 57.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1424.5 1396 54.9
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1366.3 1263 57.6
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1322.4 2322 38.5
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1187.2 2012 37.9
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1099.3 1240 49.5
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.1e-298 1031.2 2068 32.1
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.9e-296 1023.1 1220 46.0
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.9e-276 957.2 1095 47.9
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.3e-272 944.5 2072 31.8
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 6.1e-270 935.6 1025 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.2e-262 911.4 2091 30.1
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 4.5e-257 892.9 780 58.5
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 4.7e-254 882.9 665 68.4
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.8e-243 847.0 712 63.9
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.3e-240 838.2 586 70.3
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.8e-221 774.6 752 54.5
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.2e-214 751.9 1337 36.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.2e-206 725.3 743 52.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 9.5e-199 699.1 1439 33.5
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.8e-198 697.6 792 52.1
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 9.6e-191 672.5 475 72.0
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.0e-184 652.5 850 42.4
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.2e-172 612.5 731 46.8
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 3.7e-166 590.9 716 44.4
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-159 569.3 531 59.3
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.0e-147 529.6 766 41.9
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 6.5e-147 526.9 500 55.8
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 7.0e-141 506.9 2198 23.7
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.8e-133 482.3 603 46.4
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 2.0e-127 462.2 336 67.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.0e-123 449.9 391 60.9
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.2e-121 443.0 420 56.7
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 9.2e-109 400.2 745 34.9
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 4.0e-104 384.8 658 36.2
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.5e-98 366.3 647 35.9
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.0e-80 305.1 232 65.5
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.8e-76 290.8 201 70.1
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 8.7e-59 234.2 190 64.2
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 7.4e-58 231.1 484 31.4
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.5e-55 223.4 213 55.9
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.2e-53 215.7 583 30.2
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.3e-51 210.3 349 41.3
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.1e-48 198.7 138 70.3
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 9.3e-45 187.6 133 69.2
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.3e-42 179.1 148 54.7
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.3e-42 178.7 376 33.5
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.2e-39 170.6 127 63.8
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.8e-38 165.6 100 79.0
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 2.0e-31 143.3 125 55.2
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 6.5e-30 138.3 704 24.3
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.5e-29 136.3 149 53.0
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 4.2e-29 135.6 171 42.1
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 7.2e-29 134.8 93 67.7
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 2.3e-27 129.8 90 65.6
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.9e-27 129.0 95 63.2
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 2.6e-26 126.3 157 42.7
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.1e-24 119.4 127 51.2
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.6e-23 116.3 112 52.7
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.0e-22 114.4 525 23.2
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 5.0e-22 112.1 90 64.4
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 3.2e-21 109.4 122 43.4
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 8.0e-20 104.8 120 42.5
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.8e-19 103.6 138 44.9
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 4.8e-17 95.5 71 62.0
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 6.3e-17 95.1 81 58.0
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 6.3e-17 95.1 110 46.4
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 1.1e-16 94.4 80 61.2
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.7e-15 89.7 147 34.7
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 3.5e-15 89.4 113 46.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 4.5e-15 89.0 51 72.5
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 4.5e-15 89.0 163 37.4
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.3e-14 87.4 68 66.2
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 2.1e-12 80.1 149 38.3
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.6e-12 79.3 248 30.2
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 6.1e-12 78.6 59 55.9
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 6.1e-12 78.6 74 54.1
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 8.0e-12 78.2 56 64.3
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 1.4e-11 77.4 107 46.7
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.0e-10 73.6 118 41.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 3.4e-10 72.8 66 54.5
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 3.7e-09 69.3 96 51.0
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 7.0e-08 65.1 43 62.8
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 2.7e-07 63.2 68 51.5
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 1.0e-06 61.2 95 40.0
CARHR053140 Cardamine hirsuta HOM05D004110 ORTHO05D004810 8.5e-06 58.2 75 44.0


User provided reference genes

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