Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G058628 Manihot esculenta HOM05D003840 ORTHO05D004565 2.6e-65 251.9 128 100.0
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 3.3e-60 235.0 128 93.8
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 1.1e-34 150.2 111 67.6
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 4.1e-34 148.3 113 70.8
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 1.5e-28 129.8 94 68.1
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 4.4e-28 128.3 114 56.1
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 7.4e-28 127.5 101 63.4
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 7.4e-28 127.5 127 63.0
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 1.3e-27 126.7 127 56.7
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 2.2e-27 125.9 93 69.9
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 3.7e-27 125.2 106 59.4
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 1.8e-26 122.9 103 61.2
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 2.4e-26 122.5 84 72.6
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 2.4e-26 122.5 101 64.4
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 3.1e-26 122.1 126 54.0
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 5.3e-26 121.3 88 71.6
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 7.0e-26 120.9 84 72.6
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 7.0e-26 120.9 113 59.3
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 9.1e-26 120.6 87 64.4
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 1.2e-25 120.2 119 57.1
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 1.5e-25 119.8 114 57.0
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 3.5e-25 118.6 93 67.7
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 4.5e-25 118.2 127 54.3
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 4.5e-25 118.2 123 51.2
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 5.9e-25 117.9 101 60.4
TPR.G31093 Trifolium pratense HOM05D003840 ORTHO05D004565 5.9e-25 117.9 127 53.5
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 1.0e-24 117.1 117 57.3
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 1.0e-24 117.1 87 63.2
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 1.3e-24 116.7 93 63.4
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 1.3e-24 116.7 122 53.3
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 1.7e-24 116.3 112 56.2
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 2.2e-24 115.9 88 64.8
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 2.2e-24 115.9 119 51.3
Phvul.005G082600 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 2.9e-24 115.5 114 52.6
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 3.8e-24 115.2 128 50.8
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 5.0e-24 114.8 93 60.2
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 6.5e-24 114.4 88 67.0
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 8.5e-24 114.0 120 52.5
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 8.5e-24 114.0 84 70.2
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 8.5e-24 114.0 93 59.1
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 1.9e-23 112.8 88 63.6
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 1.9e-23 112.8 123 52.8
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 2.5e-23 112.5 114 59.6
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 3.2e-23 112.1 129 49.6
Lalb_Chr25g0286521 Lupinus albus HOM05D003840 ORTHO05D004565 4.2e-23 111.7 127 51.2
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 4.2e-23 111.7 126 50.8
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 5.5e-23 111.3 93 62.4
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 5.5e-23 111.3 84 70.2
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 5.5e-23 111.3 127 50.4
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 9.4e-23 110.5 111 54.1
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 1.6e-22 109.8 131 47.3
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 1.6e-22 109.8 117 52.1
Aqoxy3G02137 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 2.7e-22 109.0 85 67.1
MBI17_g43196_MAGBIO Magnolia biondii HOM05D003840 ORTHO05D004565 2.7e-22 109.0 90 63.3
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 2.7e-22 109.0 115 53.9
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 3.6e-22 108.6 88 62.5
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 6.1e-22 107.8 101 58.4
Lj4g0007507 Lotus japonicus HOM05D003840 ORTHO05D004565 6.1e-22 107.8 127 49.6
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 8.0e-22 107.5 124 49.2
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 1.8e-21 106.3 94 58.5
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 1.8e-21 106.3 121 52.9
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 1.8e-21 106.3 92 56.5
BcaC08g44019 Brassica carinata HOM05D003840 ORTHO05D004565 2.3e-21 105.9 129 46.5
C06p14330 Brassica napus HOM05D003840 ORTHO05D004565 2.3e-21 105.9 129 46.5
THA.LOC104810482 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 2.3e-21 105.9 116 52.6
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 3.0e-21 105.5 84 64.3
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 3.0e-21 105.5 106 57.5
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.0e-21 105.5 106 57.5
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.0e-21 105.5 106 57.5
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 3.0e-21 105.5 87 60.9
BolC6t36608H Brassica oleracea HOM05D003840 ORTHO05D004565 4.0e-21 105.1 129 46.5
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 5.2e-21 104.8 83 67.5
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 1.1e-20 103.6 120 48.3
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.1e-20 103.6 106 54.7
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 1.1e-20 103.6 82 69.5
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 2.0e-20 102.8 89 57.3
Aa31LG10G2130 Aethionema arabicum HOM05D003840 ORTHO05D004565 2.6e-20 102.4 103 53.4
CDE08G0584 Ceratophyllum demersum HOM05D003840 ORTHO05D004565 2.6e-20 102.4 82 62.2
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 2.6e-20 102.4 106 55.7
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 4.4e-20 101.7 96 58.3
HanXRQChr13g0407421 Helianthus annuus HOM05D003840 ORTHO05D004565 5.7e-20 101.3 84 61.9
Ah.03g144680 Amaranthus hybridus HOM05D003840 ORTHO05D004565 7.4e-20 100.9 96 57.3
Thhalv10011345m.g Eutrema salsugineum HOM05D003840 ORTHO05D004565 7.4e-20 100.9 83 59.0
BcaC08g43481 Brassica carinata HOM05D003840 ORTHO05D004565 1.3e-19 100.1 84 56.0
C06p08670 Brassica napus HOM05D003840 ORTHO05D004565 1.3e-19 100.1 84 56.0
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 1.3e-19 100.1 107 52.3
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 1.3e-19 100.1 107 52.3
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 1.3e-19 100.1 107 53.3
A06p01380 Brassica napus HOM05D003840 ORTHO05D004565 1.7e-19 99.8 88 55.7
BraA06t23360Z Brassica rapa HOM05D003840 ORTHO05D004565 1.7e-19 99.8 88 55.7
Sp1g39540 Schrenkiella parvula HOM05D003840 ORTHO05D004565 1.7e-19 99.8 124 46.0
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 3.7e-19 98.6 84 63.1
ECA240G0083 Erigeron canadensis HOM05D003840 ORTHO05D004565 8.2e-19 97.4 84 57.1
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 2.4e-18 95.9 84 59.5
Hund22938 Selenicereus undatus HOM05D003840 ORTHO05D004565 2.4e-18 95.9 91 57.1
GSVIVG01014369001 Vitis vinifera HOM05D003840 ORTHO05D004565 2.4e-18 95.9 86 60.5
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 5.3e-18 94.7 106 52.8
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 7.0e-18 94.4 122 49.2
Carub.0001s4212 Capsella rubella HOM05D003840 ORTHO05D004565 9.1e-18 94.0 120 44.2
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 9.1e-18 94.0 83 60.2
CARHR224670 Cardamine hirsuta HOM05D003840 ORTHO05D004565 1.2e-17 93.6 84 57.1
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 2.0e-17 92.8 90 53.3
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 2.0e-17 92.8 86 57.0
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 2.0e-17 92.8 83 59.0
PGR031G0721 Punica granatum HOM05D003840 ORTHO05D004565 2.6e-17 92.4 107 47.7
Lj4g0015469 Lotus japonicus HOM05D003840 ORTHO05D004565 3.5e-17 92.0 126 46.8
Sc07g0002600 Simmondsia chinensis HOM05D003840 ORTHO05D004565 3.5e-17 92.0 95 53.7
AL1G61320 Arabidopsis lyrata HOM05D003840 ORTHO05D004565 5.9e-17 91.3 73 60.3
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 5.9e-17 91.3 83 60.2
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 1.3e-16 90.1 84 56.0
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 1.7e-16 89.7 82 56.1
unitig_46.g18324 Utricularia gibba HOM05D003840 ORTHO05D004565 2.2e-16 89.4 89 55.1
AT1G52980 Arabidopsis thaliana HOM05D003840 ORTHO05D004565 3.8e-16 88.6 73 58.9
CARHR043180 Cardamine hirsuta HOM05D003840 ORTHO05D004565 6.5e-16 87.8 119 43.7
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 9.4e-15 84.0 84 53.6
ATR0680G057 Amborella trichopoda HOM05D003840 ORTHO05D004565 2.7e-14 82.4 143 42.0
Zm00001eb016990 Zea mays HOM05D003840 ORTHO05D004565 2.7e-14 82.4 79 49.4
Os03g0352400 Oryza sativa ssp. japonica HOM05D003840 ORTHO05D004565 6.1e-14 81.3 79 51.9
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.8e-13 79.7 83 53.0
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.8e-13 79.7 83 53.0
SEGI_28100 Sequoiadendron giganteum HOM05D003840 ORTHO05D004565 3.4e-12 75.5 90 46.7
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 3.1e-10 68.9 84 47.6
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis HOM05D003840 ORTHO05D004565 4.1e-10 68.6 102 40.2
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis HOM05D003840 ORTHO05D004565 1.6e-09 66.6 102 37.3
Ah.02g127530 Amaranthus hybridus HOM05D003840 ORTHO05D004565 2.7e-09 65.9 86 46.5
Cfa019305 Carpinus fangiana HOM05D003840 ORTHO05D004565 4.5e-09 65.1 64 57.8
Mapoly0122s0018 Marchantia polymorpha HOM05D003840 ORTHO05D004565 7.7e-09 64.3 127 35.4
HPP92_018299 Vanilla planifolia HOM05D003840 ORTHO05D004565 7.7e-09 64.3 103 42.7
Ciclev10009987m.g Citrus clementina HOM05D003840 ORTHO05D004565 1.0e-08 63.9 94 41.5
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 1.0e-08 63.9 103 42.7
SGA_v2.0_scaffold34G13732 Striga asiatica HOM05D003840 ORTHO05D004565 1.3e-08 63.5 53 52.8
Pp3c1_3230 Physcomitrium patens HOM05D003840 ORTHO05D004565 8.5e-08 60.8 83 41.0
MD03G1224500 Malus domestica HOM05D003840 ORTHO05D004565 1.2e-06 57.0 52 53.8
RcHm_v2.0_Chr4g0433491 Rosa chinensis HOM05D003840 ORTHO05D004565 3.6e-06 55.5 26 80.8
PSO210G3517 Papaver somniferum HOM05D003840 ORTHO05D004565 4.7e-06 55.1 42 57.1


User provided reference genes

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