Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 1.4e-130 469.5 228 100.0
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.1e-93 347.1 228 73.7
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.8e-93 346.3 225 73.8
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 4.5e-92 341.7 229 72.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.0e-91 340.5 229 72.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.3e-91 340.1 229 72.9
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.3e-91 340.1 229 72.5
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.7e-91 339.7 229 73.4
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 6.4e-91 337.8 229 72.9
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.1e-90 337.0 229 72.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.6e-89 333.2 229 70.7
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.6e-89 331.6 229 70.3
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 4.6e-89 331.6 229 71.2
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.8e-88 329.7 225 70.7
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-88 328.6 230 70.0
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 5.1e-88 328.2 228 70.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 8.7e-88 327.4 229 68.6
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.7e-88 327.4 229 69.9
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 3.3e-87 325.5 225 68.4
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.6e-86 323.2 225 68.9
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.8e-86 321.6 225 69.8
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 6.2e-86 321.2 226 69.5
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 4.0e-85 318.5 225 69.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.3e-85 318.2 228 68.0
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.6e-84 315.8 225 69.8
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 3.4e-84 315.5 225 68.0
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.4e-84 315.5 223 68.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 4.5e-84 315.1 225 68.0
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.3e-83 313.5 228 65.8
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.7e-83 313.2 229 67.2
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.2e-83 312.8 229 66.4
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 3.8e-83 312.0 225 68.0
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.2e-82 308.9 228 66.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 4.2e-82 308.5 224 65.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.5e-82 308.1 227 66.1
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 9.3e-82 307.4 220 65.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.2e-81 307.0 229 66.4
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.2e-81 307.0 225 66.7
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.6e-81 305.1 228 67.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 7.9e-81 304.3 230 66.5
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-79 300.1 223 65.5
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.9e-79 299.7 230 63.9
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.9e-79 299.7 228 65.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.5e-79 299.3 223 63.7
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 5.7e-79 298.1 229 63.8
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 9.7e-79 297.4 229 68.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.3e-78 294.7 229 64.6
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 5.3e-77 291.6 227 61.7
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.9e-77 291.2 225 64.4
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.0e-77 290.8 224 63.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 9.0e-77 290.8 230 67.8
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 2.0e-76 289.7 226 66.4
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.0e-76 289.7 227 62.6
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.6e-76 289.3 225 63.6
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.4e-76 288.9 226 66.8
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.5e-76 288.5 229 65.5
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 7.7e-76 287.7 225 62.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.7e-76 287.7 229 62.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.0e-75 287.3 226 66.4
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.3e-75 287.0 229 65.5
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.2e-75 286.2 226 66.4
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.8e-75 285.4 229 65.9
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 5.0e-75 285.0 225 62.7
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 6.5e-75 284.6 226 61.1
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 8.5e-75 284.3 225 61.8
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 5.5e-74 281.6 227 62.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.8e-72 276.6 231 61.0
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-72 275.4 185 71.4
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.5e-71 272.7 224 61.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 3.3e-71 272.3 228 55.7
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.3e-70 270.4 227 56.4
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.3e-70 270.4 222 59.9
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 5.3e-69 265.0 224 57.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 6.9e-69 264.6 226 58.8
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.0e-68 263.1 224 57.6
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.6e-68 262.7 227 57.3
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.6e-68 262.7 227 58.1
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 3.4e-68 262.3 224 57.6
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.9e-68 261.5 224 56.7
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.0e-67 260.8 227 57.7
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.3e-67 260.4 207 63.3
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.7e-67 260.0 226 58.4
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.7e-67 260.0 224 56.7
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.2e-67 259.6 206 60.2
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.9e-67 259.2 227 56.8
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.8e-67 258.8 227 57.3
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 6.5e-67 258.1 229 57.6
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.2e-66 255.8 228 57.9
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.2e-66 255.4 203 60.1
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.2e-65 253.8 224 57.6
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 3.6e-65 252.3 230 56.1
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.7e-65 251.9 220 60.0
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 9.7e-63 244.2 227 54.6
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 3.7e-62 242.3 224 54.9
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 6.3e-62 241.5 220 60.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.2e-60 237.3 236 51.7
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.6e-60 236.1 225 54.7
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.7e-59 233.4 236 51.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.2e-58 229.2 246 47.6
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 7.2e-58 228.0 228 51.3
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.4e-53 213.8 221 50.7
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.6e-52 210.3 141 70.2
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.0e-52 209.9 225 48.9
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 5.5e-50 201.8 227 48.5
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 6.1e-49 198.4 238 44.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.4e-48 197.2 244 45.5
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.8e-48 196.8 243 43.6
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-48 196.8 249 45.4
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.0e-48 195.7 227 44.5
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 7.5e-47 191.4 227 44.5
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.8e-46 189.5 249 45.4
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 8.3e-46 188.0 228 42.5
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.4e-45 187.2 230 42.2
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.6e-44 183.7 231 42.4
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.0e-43 181.0 262 37.8
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.3e-43 180.6 224 43.8
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.3e-43 180.6 231 43.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.2e-43 179.9 225 47.1
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 2.9e-43 179.5 258 37.6
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.5e-42 175.3 227 40.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 9.4e-42 174.5 258 37.6
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.6e-41 173.7 130 66.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 2.7e-41 172.9 173 50.9
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 2.7e-41 172.9 173 50.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-41 172.9 229 46.7
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.8e-40 170.2 238 43.3
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.8e-40 168.3 229 46.3
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.8e-40 167.9 261 35.6
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.7e-39 165.2 261 35.6
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 5.7e-39 165.2 151 53.6
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 4.9e-38 162.2 208 44.7
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-36 156.8 249 38.6
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.3e-35 154.1 233 37.3
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 6.6e-35 151.8 179 44.1
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.5e-34 150.6 232 38.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 3.6e-33 146.0 139 52.5
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 6.1e-33 145.2 151 48.3
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.2e-31 141.0 152 46.7
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.6e-31 139.8 229 37.6
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.6e-31 139.8 210 36.7
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 4.4e-31 139.0 134 50.7
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.3e-30 137.5 244 34.8
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 8.3e-30 134.8 207 36.2
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-29 134.0 132 53.8
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.8e-29 133.7 152 42.1
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 3.2e-29 132.9 228 36.0
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.2e-29 131.3 132 52.3
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.0e-27 127.9 132 51.5
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.6e-25 119.4 147 43.5
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 4.0e-24 115.9 141 43.3
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 5.2e-24 115.5 103 53.4
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 8.9e-24 114.8 140 41.4
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.5e-23 114.0 140 41.4
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.3e-22 110.9 114 50.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.0e-19 101.3 234 28.6
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.3e-18 96.3 212 34.9
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.3e-18 95.1 103 45.6
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.6e-17 92.8 75 57.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.2e-15 87.8 150 35.3
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-15 87.4 105 41.0
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-13 80.5 161 31.7
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.7e-12 76.6 193 30.6
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.3e-10 69.3 82 42.7
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.3e-08 63.5 115 33.0
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.1e-08 63.2 68 47.1


User provided reference genes

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