Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 8.5e-222 773.5 423 100.0
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.1e-160 570.5 434 73.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 4.8e-156 555.1 445 70.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.3e-155 551.6 451 72.1
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.2e-153 546.2 464 71.3
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.3e-150 537.0 448 67.2
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.3e-150 536.2 432 70.1
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 8.7e-150 534.3 437 73.7
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 6.2e-148 528.1 444 68.2
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.8e-146 521.5 442 70.1
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.9e-144 516.5 425 66.8
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.2e-144 515.8 446 69.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.2e-144 515.8 444 67.8
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.3e-144 514.2 441 71.2
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 6.0e-143 511.5 491 64.6
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 7.9e-143 511.1 452 63.5
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.0e-142 510.8 456 62.1
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.0e-142 510.8 482 65.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.9e-142 508.8 433 66.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.7e-142 507.7 452 63.3
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 8.7e-142 507.7 440 68.2
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 8.7e-142 507.7 434 66.4
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 8.7e-142 507.7 476 63.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.3e-141 505.8 434 66.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 9.7e-141 504.2 428 69.4
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.7e-141 504.2 476 62.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.3e-140 503.8 477 63.9
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-140 503.8 452 63.1
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.6e-140 503.4 477 63.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 8.2e-140 501.1 473 66.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.1e-139 498.8 476 64.5
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.1e-139 498.8 425 64.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 4.5e-138 495.4 427 64.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.6e-138 494.6 437 67.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 5.0e-137 491.9 427 68.4
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.5e-137 491.5 427 66.3
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.9e-136 490.0 436 67.9
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.2e-136 489.2 444 65.3
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 3.2e-136 489.2 432 62.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 3.2e-136 489.2 434 66.1
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.7e-135 486.1 477 62.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.4e-134 483.8 441 66.2
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 6.7e-134 481.5 478 62.3
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.1e-133 480.7 464 59.7
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.2e-132 476.5 462 60.6
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 2.4e-131 473.0 442 59.5
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 3.1e-131 472.6 503 60.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 3.1e-131 472.6 510 60.0
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 6.9e-131 471.5 483 58.0
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.5e-130 470.3 438 64.8
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.5e-130 470.3 438 68.3
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.9e-129 466.1 449 64.1
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 3.8e-129 465.7 427 62.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 5.5e-128 461.8 468 59.2
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 7.2e-128 461.5 466 58.6
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.7e-127 458.8 501 57.3
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.1e-126 455.3 430 63.7
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.0e-125 453.4 434 62.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 7.4e-125 451.4 463 62.0
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 2.2e-124 449.9 519 52.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.7e-124 449.1 416 65.4
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.8e-124 448.7 434 62.2
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 6.3e-124 448.4 450 61.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.1e-123 447.6 425 60.7
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.8e-123 446.8 436 59.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.4e-123 446.4 450 62.9
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 4.1e-123 445.7 432 62.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.0e-122 443.4 438 58.7
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.7e-119 433.0 436 57.6
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.6e-119 432.6 487 53.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 8.0e-119 431.4 427 63.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.8e-118 430.3 457 59.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 3.0e-118 429.5 445 62.2
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.7e-118 428.3 485 52.8
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 8.8e-118 427.9 427 63.2
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 7.4e-117 424.9 454 59.9
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 2.2e-116 423.3 433 57.3
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 8.2e-116 421.4 431 63.1
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 4.1e-115 419.1 433 56.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.3e-115 418.7 450 55.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 9.1e-115 417.9 435 55.9
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.6e-114 417.2 458 57.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.7e-113 413.7 437 55.8
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 3.8e-113 412.5 410 63.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 6.5e-113 411.8 462 53.7
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.0e-110 404.4 433 57.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.2e-108 396.7 488 55.1
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 6.3e-108 395.2 430 54.2
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 6.3e-108 395.2 506 54.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.4e-107 393.3 444 57.4
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.1e-107 392.9 421 58.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.6e-106 390.6 462 52.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 7.7e-106 388.3 394 57.6
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.2e-105 386.7 439 60.4
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.8e-105 386.0 459 52.1
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 8.5e-105 384.8 449 60.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.4e-102 377.5 499 51.7
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.5e-101 374.0 458 51.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.4e-101 372.9 457 51.2
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.1e-99 366.3 490 48.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 9.1e-99 364.8 448 52.5
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.6e-95 354.0 448 50.7
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.1e-95 353.6 445 51.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 6.8e-94 348.6 468 54.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.6e-93 346.7 432 50.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.5e-90 336.3 392 52.0
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 7.8e-90 335.1 493 47.1
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.9e-89 333.2 392 51.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.3e-86 323.6 486 49.6
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 9.8e-85 318.2 198 80.3
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.2e-83 313.2 441 48.3
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.1e-80 304.7 174 86.8
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 3.3e-80 303.1 448 48.4
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.4e-78 297.7 516 42.8
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.8e-78 297.4 415 48.4
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.1e-75 288.1 460 45.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-72 278.1 388 47.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.5e-72 277.7 192 74.0
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.6e-71 274.2 311 54.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.1e-70 270.0 331 50.8
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.0e-69 267.3 366 48.9
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.8e-60 236.5 495 40.2
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.3e-57 228.0 333 49.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.9e-57 226.5 128 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.9e-52 210.3 383 40.7
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.4e-51 208.0 169 66.3
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 6.0e-42 176.0 391 36.1
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.6e-39 167.9 158 55.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.4e-38 164.9 407 37.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 5.8e-37 159.5 184 47.3
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.1e-30 137.1 147 45.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.7e-26 124.0 321 33.3
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 6.7e-25 119.4 163 49.7
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 5.7e-24 116.3 65 86.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.2e-23 112.5 94 63.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.3e-22 109.8 114 58.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 8.5e-20 102.4 97 58.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.3e-15 88.6 397 30.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.3e-15 88.6 397 30.0
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.2e-15 87.8 102 49.0
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.2e-15 87.8 102 49.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 4.8e-15 86.7 192 33.9
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-14 84.7 103 50.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 3.4e-13 80.5 56 67.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 2.3e-09 67.8 148 40.5
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 7.0e-06 56.2 126 31.0


User provided reference genes

Program Settings