Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 0.0e+00 1130.9 759 100.0
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 6.1e-186 655.2 800 61.6
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 3.6e-178 629.4 802 55.5
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 8.8e-169 598.2 773 56.7
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 2.7e-165 586.6 777 56.5
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 7.7e-165 585.1 783 60.9
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 4.1e-158 562.8 782 59.2
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.8e-154 550.1 778 57.1
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 8.3e-151 538.5 767 59.5
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 1.8e-150 537.3 769 57.5
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 5.4e-150 535.8 798 56.3
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.5e-147 527.7 532 59.2
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 5.6e-147 525.8 787 55.9
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 8.0e-146 521.9 769 58.3
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 3.1e-145 520.0 532 58.5
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 5.2e-145 519.2 520 61.0
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 7.5e-144 515.4 768 56.6
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 9.8e-144 515.0 770 57.5
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.4e-142 511.1 768 56.5
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 7.3e-139 498.8 797 54.5
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.7e-138 496.1 769 57.7
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.1e-137 495.0 519 57.0
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 3.1e-137 493.4 767 58.8
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 5.8e-136 489.2 773 56.5
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 8.3e-135 485.3 777 59.6
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.5e-133 479.9 771 54.5
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.9e-131 474.2 527 55.2
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 3.3e-131 473.4 521 55.1
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 3.3e-131 473.4 531 55.4
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 8.1e-130 468.8 786 52.3
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 1.8e-129 467.6 774 57.8
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 4.0e-129 466.5 748 54.1
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 1.5e-128 464.5 774 56.7
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 2.6e-128 463.8 511 55.0
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.7e-127 461.1 779 51.9
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 2.2e-127 460.7 515 55.7
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.9e-127 460.3 512 56.1
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 1.1e-126 458.4 519 54.7
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 1.6e-125 454.5 794 48.7
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 6.0e-125 452.6 515 55.0
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.9e-123 447.6 770 54.0
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 3.1e-121 440.3 778 48.7
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.7e-119 434.5 513 54.4
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.1e-115 421.8 438 57.3
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 1.9e-115 421.0 798 46.9
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 5.3e-113 412.9 421 59.9
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 5.8e-112 409.5 503 52.1
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 6.4e-111 406.0 617 45.1
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 3.2e-110 403.7 806 48.8
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.2e-109 401.7 503 51.7
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 2.1e-109 401.0 497 52.3
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 3.3e-107 393.7 786 50.8
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.3e-106 391.7 835 51.4
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 5.3e-105 386.3 837 51.4
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 1.2e-104 385.2 558 47.3
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 2.9e-103 380.6 562 45.7
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 6.4e-103 379.4 496 47.8
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 1.1e-102 378.6 838 51.0
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 1.2e-101 375.2 486 50.4
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 1.3e-100 371.7 611 59.7
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.8e-100 371.3 587 46.2
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.1e-99 368.6 549 45.5
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 1.1e-99 368.6 831 50.2
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 3.3e-99 367.1 836 48.7
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 9.6e-99 365.5 781 45.1
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 8.1e-98 362.5 809 43.4
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 6.9e-97 359.4 736 51.2
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 4.9e-95 353.2 642 48.4
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 8.4e-95 352.4 512 45.7
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 2.5e-94 350.9 801 44.1
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 1.6e-93 348.2 787 47.1
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.3e-92 345.1 387 52.7
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 2.1e-90 337.8 800 44.8
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 4.2e-86 323.6 787 46.0
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 7.9e-85 319.3 515 42.9
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 6.7e-84 316.2 519 44.3
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.5e-83 315.1 515 44.7
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 4.8e-82 310.1 519 44.9
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 8.2e-82 309.3 514 42.8
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.4e-81 308.5 475 45.5
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 3.2e-78 297.4 583 42.2
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 1.6e-77 295.0 516 43.0
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 6.1e-77 293.1 516 42.4
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 3.0e-76 290.8 516 42.6
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 1.5e-75 288.5 513 41.9
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 4.3e-75 287.0 514 42.6
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 7.4e-75 286.2 512 42.8
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 9.7e-75 285.8 514 42.2
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 9.7e-75 285.8 517 41.8
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 7.9e-69 266.2 584 38.4
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 2.6e-67 261.2 479 38.8
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 1.3e-66 258.8 489 42.3
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 3.7e-66 257.3 404 45.8
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 1.2e-64 252.3 584 35.8
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.1e-61 240.0 243 55.6
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 2.6e-59 234.6 553 34.9
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 6.1e-53 213.4 648 32.7
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 2.5e-46 191.4 280 44.3
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 1.1e-41 176.0 534 32.0
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 4.0e-36 157.5 556 29.3
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.2e-35 156.0 202 49.0
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 2.2e-26 125.2 785 29.9
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-11 74.7 147 33.3
Nn6g32350 Nelumbo nucifera HOM05D006512 ORTHO05D008027 1.6e-08 65.9 161 37.3
Cpa.g.c37452 Carica papaya HOM05D006512 ORTHO05D008027 4.6e-08 64.3 66 59.1
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 1.0e-07 63.2 122 39.3
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 2.3e-07 62.0 55 43.6
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.5e-06 58.5 76 34.2
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.5e-06 58.5 76 34.2
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 2.5e-06 58.5 117 29.1
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 4.3e-06 57.8 79 34.2
Actinidia32261 Actinidia chinensis HOM05D006512 ORTHO05D008027 5.6e-06 57.4 60 58.3
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 5.6e-06 57.4 131 29.8
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 9.6e-06 56.6 67 35.8
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 9.6e-06 56.6 113 30.1


User provided reference genes

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