Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 3.0e-108 395.2 201 100.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.7e-85 318.2 201 81.1
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.9e-71 272.3 201 67.2
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.2e-70 268.9 199 65.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 7.2e-70 267.7 199 64.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.7e-69 265.8 200 64.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.7e-69 265.8 199 65.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.6e-69 265.4 190 68.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.7e-69 265.0 190 68.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 8.0e-69 264.2 200 64.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 8.0e-69 264.2 199 64.3
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.3e-68 262.7 199 64.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.0e-68 261.9 190 67.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.8e-68 261.2 196 64.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 8.8e-68 260.8 200 64.5
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.6e-67 259.2 200 64.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.6e-67 259.2 198 64.1
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.3e-66 256.9 197 63.5
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.3e-66 256.9 199 63.3
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.3e-66 256.9 196 64.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.3e-66 256.9 199 62.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 4.8e-66 255.0 199 65.3
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.4e-65 253.4 187 65.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.8e-65 253.1 193 64.2
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 7.0e-65 251.1 196 64.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-64 249.6 192 63.5
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.7e-64 249.2 196 64.8
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.5e-64 248.8 197 60.4
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.5e-64 248.8 197 61.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 5.9e-64 248.1 197 60.4
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 7.7e-64 247.7 196 61.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.0e-63 247.3 196 61.2
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-63 247.3 195 61.5
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.3e-63 246.1 192 63.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.3e-63 246.1 196 61.2
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 8.6e-63 244.2 199 59.3
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.1e-62 243.8 194 61.9
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.1e-62 243.8 246 53.3
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.5e-62 243.4 192 64.6
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.5e-62 243.4 199 59.8
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.5e-62 243.4 199 61.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.5e-62 242.7 200 60.5
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.5e-62 242.7 199 58.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.3e-62 242.3 198 59.6
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 4.2e-62 241.9 199 60.3
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.2e-62 241.1 199 60.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.2e-61 240.4 195 61.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.6e-61 240.0 201 60.2
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-61 240.0 186 62.4
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-61 240.0 199 60.3
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.1e-61 239.6 198 59.1
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.6e-61 238.8 199 57.8
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 4.7e-61 238.4 200 60.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.1e-61 238.0 199 59.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.0e-60 237.3 198 59.6
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.8e-60 236.5 199 57.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 4.0e-60 235.3 192 59.9
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 5.2e-60 235.0 199 57.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.2e-60 235.0 191 61.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.9e-60 234.2 190 61.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 8.9e-60 234.2 195 59.5
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.2e-59 233.8 201 59.7
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.5e-59 233.4 199 59.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.6e-59 232.6 199 55.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.6e-59 232.6 195 57.4
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.7e-59 231.5 198 59.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 5.7e-59 231.5 199 58.3
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 7.5e-59 231.1 200 56.0
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 9.8e-59 230.7 195 59.0
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-58 230.3 185 62.2
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.2e-58 229.6 200 56.0
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.7e-58 228.8 198 57.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.9e-58 228.4 198 61.1
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 6.3e-58 228.0 199 57.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.3e-58 228.0 198 57.6
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.3e-58 228.0 198 58.1
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.3e-58 227.6 196 57.7
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-57 227.3 199 56.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-57 227.3 190 58.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-57 226.9 198 58.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.8e-57 226.5 195 58.5
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.8e-57 226.5 198 57.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.8e-57 226.5 198 57.1
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.4e-57 226.1 199 56.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-56 223.8 190 57.9
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.7e-56 222.6 195 56.4
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.7e-56 222.6 199 53.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.5e-56 222.2 198 59.1
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 4.5e-56 221.9 195 57.4
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.9e-56 221.5 192 56.2
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 195 57.4
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-55 219.9 198 57.6
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.7e-55 219.9 196 54.1
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.3e-55 219.5 199 53.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.9e-55 219.2 191 57.1
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 2.5e-54 216.1 193 56.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.5e-54 216.1 199 55.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.3e-54 215.3 197 52.8
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.3e-54 215.3 198 54.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-53 213.4 198 55.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 199 53.3
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 200 52.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-53 211.8 198 52.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 8.0e-53 211.1 198 52.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.4e-52 210.3 190 55.8
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.8e-52 209.9 195 53.3
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.8e-52 209.9 190 52.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 195 54.9
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 4.0e-52 208.8 198 52.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 5.2e-52 208.4 198 52.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 8.9e-52 207.6 176 59.1
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-51 206.8 203 53.7
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-51 205.7 198 51.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 5.8e-51 204.9 195 52.3
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 7.5e-51 204.5 195 51.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 9.8e-51 204.1 202 52.5
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 9.8e-51 204.1 198 50.0
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.9e-50 202.6 195 52.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-50 202.2 199 51.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-50 202.2 181 56.4
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 4.9e-50 201.8 194 50.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 8.3e-50 201.1 194 49.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 195 50.8
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.9e-49 199.9 194 49.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 194 49.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.4e-49 199.5 178 57.9
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.4e-49 199.5 149 64.4
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.4e-49 199.5 174 58.0
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.2e-49 199.1 149 62.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 9.2e-49 197.6 198 50.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-48 197.2 178 53.9
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 198 51.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.9e-47 192.2 166 56.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 5.0e-47 191.8 199 51.8
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.1e-46 190.7 142 61.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-46 190.3 194 51.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.5e-46 189.5 194 51.0
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 9.5e-46 187.6 195 51.3
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-44 183.7 163 55.8
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.4e-44 183.7 195 51.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 5.2e-44 181.8 198 49.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.2e-44 181.8 129 65.1
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 5.2e-44 181.8 166 55.4
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.2e-42 176.4 190 46.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.4e-41 173.7 194 45.4
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.6e-40 170.2 147 57.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.1e-40 169.9 158 53.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.7e-40 169.5 191 44.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.9e-39 165.6 196 44.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.6e-39 164.9 150 54.0
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.6e-39 164.5 199 42.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.3e-38 162.5 149 53.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.6e-38 161.8 190 45.3
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.6e-38 161.8 196 41.3
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 8.1e-37 157.9 126 57.9
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-35 153.7 133 57.1
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-34 150.6 203 43.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.9e-34 148.7 193 42.5
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 4.9e-34 148.7 195 42.1
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.9e-33 146.7 195 42.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 6.0e-32 141.7 195 41.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.0e-31 141.0 156 50.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.2e-28 128.6 197 40.1
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.4e-27 125.6 114 54.4
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 8.7e-23 111.3 224 31.2
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 5.6e-22 108.6 112 50.9
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.5e-19 100.5 215 31.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.3e-18 97.4 190 34.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.4e-17 93.2 186 37.1
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 3.5e-16 89.4 198 32.8
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.0e-16 88.6 105 47.6
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.3e-15 86.7 166 34.3
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.1e-14 84.3 84 51.2
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.4e-12 76.6 178 28.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.4e-12 76.6 77 49.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 2.9e-10 69.7 159 32.7
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-08 64.3 107 38.3
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.6e-08 63.9 83 43.4
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.0e-07 61.2 172 31.4


User provided reference genes

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