Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.9e-171 606.7 585 100.0
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-114 417.5 585 74.7
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.0e-113 412.9 583 73.2
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 9.3e-110 401.7 585 75.4
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 3.0e-108 396.7 583 70.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 3.7e-106 389.8 585 73.7
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 6.3e-106 389.0 585 72.6
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 8.2e-106 388.7 585 72.6
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.4e-105 387.1 583 74.4
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 6.9e-105 385.6 583 73.1
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 9.0e-105 385.2 588 70.1
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.5e-104 384.4 583 73.2
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.5e-104 382.9 585 69.6
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.0e-103 381.7 585 73.7
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.3e-103 381.3 585 75.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.4e-102 377.9 581 70.7
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.8e-100 370.9 585 78.5
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.0e-99 367.5 591 70.2
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.0e-99 367.5 585 71.1
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 3.7e-98 363.2 585 78.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 4.5e-96 356.3 583 72.9
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 1.0e-95 355.1 582 65.6
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.1e-94 351.7 591 70.1
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 3.2e-94 350.1 585 74.0
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.2e-93 348.2 585 71.6
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.1e-93 347.4 598 70.1
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 7.9e-93 345.5 583 67.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.4e-92 344.7 585 74.2
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 3.9e-92 343.2 585 71.6
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 6.7e-92 342.4 583 56.6
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.1e-91 341.7 581 70.4
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 7.4e-91 339.0 585 73.5
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.4e-89 334.7 587 64.4
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.8e-89 334.3 584 74.1
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 3.1e-89 333.6 505 71.7
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.2e-88 331.6 583 73.9
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 2.0e-88 330.9 587 63.7
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 3.5e-88 330.1 585 66.8
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 4.5e-88 329.7 630 69.0
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 4.5e-88 329.7 564 74.8
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 7.7e-88 328.9 587 72.2
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 7.7e-88 328.9 583 71.4
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.7e-87 327.8 583 65.4
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.2e-87 327.4 585 64.8
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 2.9e-87 327.0 585 66.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 3.8e-87 326.6 585 66.7
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 8.5e-87 325.5 574 60.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.1e-86 325.1 586 74.4
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.4e-86 324.7 588 64.3
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.9e-86 324.3 585 67.0
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 5.5e-86 322.8 585 67.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.6e-85 321.2 585 69.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 3.6e-85 320.1 585 68.5
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.8e-84 317.8 584 73.5
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.2e-84 316.2 598 66.7
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.1e-83 315.1 584 73.3
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 2.8e-82 310.5 585 68.9
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.7e-82 310.1 585 65.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 4.8e-82 309.7 584 64.2
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 8.2e-82 308.9 685 61.9
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.4e-81 308.1 585 67.0
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.1e-81 306.6 655 54.8
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 7.0e-81 305.8 587 63.7
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 2.6e-80 303.9 581 67.6
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.1e-78 298.5 564 72.7
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 2.5e-78 297.4 590 62.9
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.5e-78 297.4 586 71.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 5.5e-78 296.2 598 62.4
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.6e-77 294.7 602 67.9
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.6e-77 294.7 562 72.4
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 8.0e-77 292.4 583 69.5
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.2e-75 288.5 585 67.0
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.5e-75 288.1 510 67.8
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 2.0e-75 287.7 557 63.4
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.7e-74 284.6 584 71.9
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.7e-74 284.6 603 59.0
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.4e-73 281.6 511 61.3
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 5.3e-73 279.6 590 61.4
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 2.0e-72 277.7 418 73.2
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.2e-71 274.2 535 65.6
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 5.0e-71 273.1 510 66.9
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.5e-70 271.6 583 70.0
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.2e-69 268.5 563 61.5
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 3.0e-68 263.8 562 65.3
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.2e-68 263.1 317 62.1
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 5.7e-67 259.6 564 66.8
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 9.8e-67 258.8 434 73.0
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 2.2e-66 257.7 410 71.0
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 4.1e-65 253.4 562 61.4
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 7.7e-64 249.2 650 53.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 2.9e-63 247.3 585 61.9
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.6e-61 240.4 328 71.3
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 8.0e-61 239.2 588 61.9
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.4e-57 226.5 315 58.1
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 4.7e-53 213.4 594 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.0e-52 212.2 594 52.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.3e-52 211.1 222 67.1
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.7e-50 204.9 558 52.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 3.2e-49 200.7 559 34.2
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 5.4e-49 199.9 585 61.7
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.7e-48 197.6 518 61.6
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 7.8e-48 196.1 543 62.4
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 3.2e-41 174.1 246 52.4
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 4.9e-34 150.2 198 60.6
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.9e-31 140.6 87 78.2
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.5e-30 138.7 116 65.5
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 3.1e-28 131.0 146 52.1
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 9.9e-27 125.9 75 81.3
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 9.9e-27 125.9 75 81.3
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 6.4e-26 123.2 75 80.0
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.6e-24 118.6 245 42.4
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.6e-24 118.6 75 74.7
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 5.1e-23 113.6 67 77.6
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.6e-21 107.5 121 61.2
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 4.0e-20 104.0 102 82.4
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-19 102.1 120 69.2
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-19 102.1 120 69.2
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-19 102.1 120 69.2
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.1e-17 95.9 60 75.0
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.0e-15 89.4 98 75.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.9e-15 87.4 76 51.3
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.8e-13 81.3 46 89.1
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.0e-11 75.1 67 58.2
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 4.6e-08 63.9 42 73.8
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 4.6e-08 63.9 157 33.8
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.3e-07 62.4 39 74.4
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 8.7e-07 59.7 298 29.5


User provided reference genes

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