Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G109032 Manihot esculenta HOM05D002946 ORTHO05D003299 5.0e-39 164.1 89 100.0
Manes.06G084500 Manihot esculenta HOM05D002946 ORTHO05D003299 1.0e-28 129.8 74 95.9
Manes.03G095616 Manihot esculenta HOM05D002946 ORTHO05D003299 1.4e-25 119.4 74 89.2
Potri.015G058301 Populus trichocarpa HOM05D002946 ORTHO05D003299 7.2e-22 107.1 74 74.3
Sabra15G0083900 Salix brachista HOM05D002946 ORTHO05D003299 1.4e-20 102.8 74 70.3
TWI60G0509 Tripterygium wilfordii HOM05D002946 ORTHO05D003299 2.8e-18 95.1 75 70.7
TWI81G0671 Tripterygium wilfordii HOM05D002946 ORTHO05D003299 8.3e-18 93.6 75 70.7
RcHm_v2.0_Chr7g0183141 Rosa chinensis HOM05D002946 ORTHO05D003299 1.4e-17 92.8 74 67.6
ClCG04G011780 Citrullus lanatus HOM05D002946 ORTHO05D003299 5.4e-17 90.9 74 64.9
FAN13G3220 Fragaria x ananassa HOM05D002946 ORTHO05D003299 5.4e-17 90.9 74 66.2
FAN18G2717 Fragaria x ananassa HOM05D002946 ORTHO05D003299 5.4e-17 90.9 74 66.2
ECA232G3838 Erigeron canadensis HOM05D002946 ORTHO05D003299 7.0e-17 90.5 74 67.6
FAN08G1772 Fragaria x ananassa HOM05D002946 ORTHO05D003299 7.0e-17 90.5 74 64.9
Nitab4.5_0001485g0100 Nicotiana tabacum HOM05D002946 ORTHO05D003299 9.1e-17 90.1 74 62.2
Nitab4.5_0009401g0040 Nicotiana tabacum HOM05D002946 ORTHO05D003299 9.1e-17 90.1 74 62.2
Migut.I00332 Erythranthe guttata HOM05D002946 ORTHO05D003299 1.2e-16 89.7 74 64.9
Peaxi162Scf00201g00337 Petunia axillaris HOM05D002946 ORTHO05D003299 1.6e-16 89.4 70 65.7
Cc00_g01600 Coffea canephora HOM05D002946 ORTHO05D003299 2.0e-16 89.0 74 63.5
Rhsim08G0145800 Rhododendron simsii HOM05D002946 ORTHO05D003299 2.0e-16 89.0 74 62.2
Lsat_1_v5_gn_4_111120 Lactuca sativa HOM05D002946 ORTHO05D003299 2.7e-16 88.6 74 70.3
MD06G1225300 Malus domestica HOM05D002946 ORTHO05D003299 2.7e-16 88.6 74 62.2
DCAR_023170 Daucus carota HOM05D002946 ORTHO05D003299 3.5e-16 88.2 74 66.2
Prupe.5G205400 Prunus persica HOM05D002946 ORTHO05D003299 3.5e-16 88.2 74 67.6
CsaV3_1G006000 Cucumis sativus L. HOM05D002946 ORTHO05D003299 4.5e-16 87.8 74 62.2
Psat4g047040 Pisum sativum HOM05D002946 ORTHO05D003299 4.5e-16 87.8 77 67.5
Aqoxy3G03690 Aquilegia oxysepala HOM05D002946 ORTHO05D003299 7.7e-16 87.0 74 63.5
Cpa.g.sc132.25 Carica papaya HOM05D002946 ORTHO05D003299 7.7e-16 87.0 74 67.6
Gohir.D07G072900 Gossypium hirsutum HOM05D002946 ORTHO05D003299 1.3e-15 86.3 86 60.5
Gorai.001G077100 Gossypium raimondii HOM05D002946 ORTHO05D003299 1.3e-15 86.3 86 60.5
PGSC0003DMG400024636 Solanum tuberosum HOM05D002946 ORTHO05D003299 1.3e-15 86.3 74 59.5
Oeu044872.1 Olea europaea HOM05D002946 ORTHO05D003299 1.7e-15 85.9 76 61.8
MELO3C002032.2 Cucumis melo HOM05D002946 ORTHO05D003299 2.3e-15 85.5 74 59.5
Sopen03g034150 Solanum pennellii HOM05D002946 ORTHO05D003299 2.3e-15 85.5 74 58.1
Duzib205G1457 Durio zibethinus HOM05D002946 ORTHO05D003299 3.8e-15 84.7 74 62.2
VMungo1215G3333 Vigna mungo HOM05D002946 ORTHO05D003299 3.8e-15 84.7 73 69.9
Duzib068G0896 Durio zibethinus HOM05D002946 ORTHO05D003299 5.0e-15 84.3 74 62.2
Gohir.A07G068400 Gossypium hirsutum HOM05D002946 ORTHO05D003299 5.0e-15 84.3 74 66.2
AT2G29900 Arabidopsis thaliana HOM05D002946 ORTHO05D003299 6.6e-15 84.0 74 60.8
Cfa019339 Carpinus fangiana HOM05D002946 ORTHO05D003299 8.6e-15 83.6 75 65.3
PSO478G3024 Papaver somniferum HOM05D002946 ORTHO05D003299 8.6e-15 83.6 74 59.5
Solyc03g115080.2 Solanum lycopersicum HOM05D002946 ORTHO05D003299 8.6e-15 83.6 70 60.0
AL4G24640 Arabidopsis lyrata HOM05D002946 ORTHO05D003299 1.5e-14 82.8 74 59.5
Lalb_Chr12g0197211 Lupinus albus HOM05D002946 ORTHO05D003299 1.5e-14 82.8 61 77.0
Carub.0004s1099 Capsella rubella HOM05D002946 ORTHO05D003299 1.9e-14 82.4 72 61.1
Thhalv10016742m.g Eutrema salsugineum HOM05D002946 ORTHO05D003299 1.9e-14 82.4 72 61.1
MD14G1212200 Malus domestica HOM05D002946 ORTHO05D003299 1.9e-14 82.4 74 56.8
Phvul.003G184600 Phaseolus vulgaris HOM05D002946 ORTHO05D003299 1.9e-14 82.4 73 67.1
TPR.G1995 Trifolium pratense HOM05D002946 ORTHO05D003299 1.9e-14 82.4 77 64.9
Ca_21772_v3 Cicer arietinum L. HOM05D002946 ORTHO05D003299 2.5e-14 82.0 77 64.9
Haze_07730 Corylus avellana HOM05D002946 ORTHO05D003299 2.5e-14 82.0 75 64.0
THA.LOC104819399 Tarenaya hassleriana HOM05D002946 ORTHO05D003299 2.5e-14 82.0 74 59.5
CAN.G1228.23 Capsicum annuum HOM05D002946 ORTHO05D003299 3.3e-14 81.6 86 52.3
CAN.G1228.25 Capsicum annuum HOM05D002946 ORTHO05D003299 3.3e-14 81.6 86 52.3
HanXRQChr09g0270261 Helianthus annuus HOM05D002946 ORTHO05D003299 3.3e-14 81.6 74 66.2
Ah.11g047740 Amaranthus hybridus HOM05D002946 ORTHO05D003299 4.2e-14 81.3 75 61.3
Sp4g12480 Schrenkiella parvula HOM05D002946 ORTHO05D003299 5.5e-14 80.9 72 59.7
BcaB02g10282 Brassica carinata HOM05D002946 ORTHO05D003299 7.2e-14 80.5 68 63.2
BcaC02g11066 Brassica carinata HOM05D002946 ORTHO05D003299 7.2e-14 80.5 72 62.5
Medtr4g109550 Medicago truncatula HOM05D002946 ORTHO05D003299 7.2e-14 80.5 78 62.8
Aa31LG5G6760 Aethionema arabicum HOM05D002946 ORTHO05D003299 9.5e-14 80.1 72 63.9
MSTRG.22960 Avicennia marina HOM05D002946 ORTHO05D003299 9.5e-14 80.1 75 62.7
C04p20920 Brassica napus HOM05D002946 ORTHO05D003299 1.2e-13 79.7 72 62.5
BolC4t23621H Brassica oleracea HOM05D002946 ORTHO05D003299 1.2e-13 79.7 72 62.5
BolC4t23622H Brassica oleracea HOM05D002946 ORTHO05D003299 1.2e-13 79.7 72 62.5
CSS0042419 Camellia sinensis var. sinensis HOM05D002946 ORTHO05D003299 1.6e-13 79.3 86 57.0
CSS0043477 Camellia sinensis var. sinensis HOM05D002946 ORTHO05D003299 1.6e-13 79.3 86 57.0
unitig_26.g9667 Utricularia gibba HOM05D002946 ORTHO05D003299 1.6e-13 79.3 72 62.5
Glyma.17G078500 Glycine max HOM05D002946 ORTHO05D003299 2.1e-13 79.0 73 63.0
Glyma.05G020800 Glycine max HOM05D002946 ORTHO05D003299 3.6e-13 78.2 73 63.0
PSO017G2397 Papaver somniferum HOM05D002946 ORTHO05D003299 3.6e-13 78.2 69 60.9
Sc04g0004340 Simmondsia chinensis HOM05D002946 ORTHO05D003299 6.1e-13 77.4 76 56.6
CDE02G1024 Ceratophyllum demersum HOM05D002946 ORTHO05D003299 1.0e-12 76.6 74 60.8
AUR62008534 Chenopodium quinoa HOM05D002946 ORTHO05D003299 1.8e-12 75.9 89 53.9
Nn3g17453 Nelumbo nucifera HOM05D002946 ORTHO05D003299 3.0e-12 75.1 69 56.5
PGR083G0181 Punica granatum HOM05D002946 ORTHO05D003299 3.0e-12 75.1 75 58.7
A05p15530 Brassica napus HOM05D002946 ORTHO05D003299 4.0e-12 74.7 69 65.2
BraA05t20469Z Brassica rapa HOM05D002946 ORTHO05D003299 4.0e-12 74.7 69 65.2
SEGI_05975 Sequoiadendron giganteum HOM05D002946 ORTHO05D003299 4.0e-12 74.7 71 57.7
CiPaw.11G053700 Carya illinoinensis HOM05D002946 ORTHO05D003299 5.2e-12 74.3 75 60.0
SGA_v2.0_scaffold25G10957 Striga asiatica HOM05D002946 ORTHO05D003299 5.2e-12 74.3 74 59.5
Atru.chr9.569 Acer truncatum HOM05D002946 ORTHO05D003299 6.8e-12 73.9 74 62.2
Dinv22780 Davidia involucrata HOM05D002946 ORTHO05D003299 6.8e-12 73.9 75 58.7
Sed0024061 Sechium edule HOM05D002946 ORTHO05D003299 4.4e-11 71.2 72 54.2
Lj4g0012087 Lotus japonicus HOM05D002946 ORTHO05D003299 5.7e-11 70.9 66 63.6
Hma1.2p1_0060F.1_g033070 Hydrangea macrophylla HOM05D002946 ORTHO05D003299 2.8e-10 68.6 74 54.1
CANSAT80G1649 Cannabis sativa HOM05D002946 ORTHO05D003299 1.8e-09 65.9 74 52.7
Lj5C102T23 Lonicera japonica HOM05D002946 ORTHO05D003299 3.1e-09 65.1 75 58.7
Thecc.03G102200 Theobroma cacao HOM05D002946 ORTHO05D003299 5.4e-09 64.3 74 54.1
CARHR123130 Cardamine hirsuta HOM05D002946 ORTHO05D003299 2.7e-08 62.0 72 55.6
ATR0177G039 Amborella trichopoda HOM05D002946 ORTHO05D003299 3.5e-08 61.6 67 59.7
TAR622G0553 Trochodendron aralioides HOM05D002946 ORTHO05D003299 3.5e-08 61.6 74 48.6
Actinidia04824 Actinidia chinensis HOM05D002946 ORTHO05D003299 5.9e-08 60.8 68 55.9
HPP92_028336 Vanilla planifolia HOM05D002946 ORTHO05D003299 1.3e-07 59.7 63 54.0
Pp3c3_30410 Physcomitrium patens HOM05D002946 ORTHO05D003299 2.3e-07 58.9 67 52.2
vmacro07633 Vaccinium macrocarpon HOM05D002946 ORTHO05D003299 6.6e-07 57.4 66 51.5
DCAR_020639 Daucus carota HOM05D002946 ORTHO05D003299 1.1e-06 56.6 66 48.5
vmacro17612 Vaccinium macrocarpon HOM05D002946 ORTHO05D003299 3.3e-06 55.1 70 51.4
EL10Ac2g04909 Beta vulgaris HOM05D002946 ORTHO05D003299 4.3e-06 54.7 67 53.7
SalBow6G0208 Salvia bowleyana HOM05D002946 ORTHO05D003299 4.3e-06 54.7 67 46.3
SalBow6G6562 Salvia bowleyana HOM05D002946 ORTHO05D003299 5.6e-06 54.3 66 45.5
GSVIVG01029908001 Vitis vinifera HOM05D002946 ORTHO05D003299 5.6e-06 54.3 79 45.6
Cpa.g.sc2527.1 Carica papaya HOM05D002946 ORTHO05D003299 7.3e-06 53.9 80 43.8
Phvul.001G107800 Phaseolus vulgaris HOM05D002946 ORTHO05D003299 9.5e-06 53.5 66 50.0
RcHm_v2.0_Chr3g0495681 Rosa chinensis HOM05D002946 ORTHO05D003299 9.5e-06 53.5 66 45.5


User provided reference genes

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