Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 9.2e-140 500.4 279 100.0
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 3.9e-82 308.9 281 64.1
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 4.3e-81 305.4 289 65.1
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 6.5e-77 291.6 282 63.1
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.1e-76 290.8 274 64.6
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 9.4e-76 287.7 278 59.7
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 2.7e-75 286.2 280 63.6
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 2.7e-75 286.2 208 76.9
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 4.6e-75 285.4 176 80.7
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.0e-74 284.3 206 71.4
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.1e-73 280.8 216 72.2
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 7.4e-73 278.1 228 64.0
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 9.7e-73 277.7 216 66.7
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 3.7e-72 275.8 281 59.4
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 6.3e-72 275.0 176 79.0
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.1e-71 274.2 285 55.4
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.4e-71 273.1 177 77.4
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.1e-71 272.7 280 60.0
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 6.9e-71 271.6 176 76.7
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 6.9e-71 271.6 280 57.1
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 9.1e-71 271.2 281 59.1
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.2e-70 270.8 281 58.7
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.5e-70 270.4 283 58.7
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.5e-70 270.4 232 60.3
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.6e-70 269.6 279 57.0
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 3.4e-70 269.2 251 62.9
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 4.5e-70 268.9 279 56.6
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.0e-69 267.7 274 56.9
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.0e-69 267.7 267 56.6
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.0e-69 267.7 322 57.1
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 2.9e-69 266.2 255 59.2
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 2.9e-69 266.2 263 60.5
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.8e-69 265.8 178 76.4
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 5.0e-69 265.4 266 60.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 6.5e-69 265.0 282 56.7
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 8.5e-69 264.6 288 57.6
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 8.5e-69 264.6 273 57.5
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 1.1e-68 264.2 177 73.4
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.4e-68 263.8 292 56.5
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 1.9e-68 263.5 282 61.7
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 3.2e-68 262.7 284 59.2
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 4.2e-68 262.3 177 71.8
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.6e-67 260.4 179 75.4
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 4.7e-67 258.8 276 60.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 1.4e-66 257.3 286 58.4
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-65 253.8 180 72.8
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 2.0e-65 253.4 302 52.6
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 2.6e-65 253.1 180 72.2
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 3.3e-65 252.7 179 72.6
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 7.4e-65 251.5 178 72.5
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 7.4e-65 251.5 262 56.9
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 9.7e-65 251.1 226 61.5
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.7e-64 250.4 179 72.1
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 2.8e-64 249.6 179 72.1
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 2.8e-64 249.6 179 72.1
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 2.8e-64 249.6 179 72.1
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 2.8e-64 249.6 179 72.1
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 2.8e-64 249.6 278 58.3
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 6.3e-64 248.4 178 71.3
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 6.3e-64 248.4 181 71.8
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 1.4e-63 247.3 178 71.9
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.8e-63 246.9 283 57.2
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 2.4e-63 246.5 179 70.9
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.4e-63 246.5 178 71.3
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.2e-62 244.2 178 70.8
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.2e-62 244.2 179 70.9
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.2e-62 244.2 181 69.6
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.6e-62 243.8 179 70.9
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 2.9e-61 239.6 236 58.9
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 8.5e-61 238.0 169 71.6
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.1e-60 237.7 199 64.8
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.1e-60 237.7 155 78.1
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-60 237.3 169 71.0
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.9e-60 236.9 163 69.3
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.9e-60 236.9 169 71.0
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 9.4e-60 234.6 166 72.3
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 8.0e-59 231.5 164 71.3
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 5.7e-57 225.3 236 55.1
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 3.7e-56 222.6 146 75.3
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 3.7e-56 222.6 257 56.0
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.1e-55 221.1 147 73.5
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.4e-55 220.7 234 57.7
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.6e-54 217.2 148 70.9
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 6.5e-53 211.8 147 72.8
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 6.5e-53 211.8 279 49.8
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 9.4e-52 208.0 147 73.5
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.0e-50 204.5 132 75.0
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.0e-50 204.5 154 66.2
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 1.8e-50 203.8 147 72.1
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 2.3e-45 186.8 221 52.0
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 3.8e-45 186.0 179 56.4
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 3.8e-45 186.0 178 56.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 9.5e-44 181.4 167 58.1
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.2e-41 174.5 121 73.6
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 9.8e-41 171.4 122 72.1
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 9.8e-41 171.4 252 45.6
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.4e-39 167.5 177 53.1
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 6.6e-37 158.7 158 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.3e-34 150.2 157 51.6
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 6.4e-32 142.1 103 70.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 4.6e-30 136.0 145 55.9
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.7e-29 134.0 104 59.6
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 2.3e-29 133.7 125 60.8
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.9e-28 130.6 86 73.3
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 1.6e-27 127.5 145 55.2
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 6.8e-26 122.1 85 76.5
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 4.9e-24 115.9 75 74.7
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 6.4e-24 115.5 85 67.1
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 4.1e-23 112.8 92 56.5
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 7.0e-23 112.1 105 63.8
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 1.6e-22 110.9 183 41.0
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 3.5e-22 109.8 184 40.8
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.2e-19 101.3 171 49.1
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 4.7e-19 99.4 126 47.6
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.5e-17 94.4 161 43.5
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 4.9e-16 89.4 87 60.9
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 7.1e-15 85.5 65 67.7
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 3.5e-14 83.2 104 46.2
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 3.3e-12 76.6 65 56.9
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 4.0e-10 69.7 47 70.2
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.4e-09 66.6 43 72.1
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 5.8e-09 65.9 85 42.4
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 9.9e-09 65.1 55 58.2


User provided reference genes

Program Settings