Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 7.1e-52 209.5 103 100.0
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 6.3e-32 143.3 103 68.0
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 1.8e-31 141.7 100 69.0
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 3.2e-28 131.0 103 59.2
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 2.7e-27 127.9 102 63.7
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 7.4e-25 119.8 103 56.3
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.4e-23 114.8 103 54.4
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.1e-23 114.0 103 54.4
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 9.1e-23 112.8 81 69.1
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 2.0e-22 111.7 103 52.4
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 5.9e-22 110.2 103 54.4
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.3e-21 109.0 103 52.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.7e-21 108.6 86 61.6
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 2.9e-21 107.8 102 51.0
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.9e-21 107.8 88 58.0
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 3.6e-19 100.9 104 51.9
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 4.7e-19 100.5 103 47.6
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 6.1e-19 100.1 104 55.8
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 6.1e-19 100.1 91 50.5
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 7.9e-19 99.8 103 50.5
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.8e-18 98.6 93 54.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.8e-18 98.6 93 54.8
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 5.2e-18 97.1 78 60.3
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 8.8e-18 96.3 103 46.6
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.2e-16 91.7 104 49.0
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 6.3e-16 90.1 104 49.0
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-15 89.0 102 49.0
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 4.1e-15 87.4 101 44.6
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.0e-14 85.1 104 46.2
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 5.9e-14 83.6 64 60.9
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 7.7e-14 83.2 92 50.0
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.5e-12 79.0 78 55.1
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 2.5e-12 78.2 103 40.8
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 5.5e-12 77.0 63 55.6
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 9.4e-12 76.3 86 48.8
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 9.4e-12 76.3 86 48.8
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.6e-11 75.5 99 40.4
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 4.7e-11 73.9 72 54.2
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 8.0e-11 73.2 89 47.2
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 1.8e-10 72.0 64 56.2
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 3.0e-10 71.2 68 51.5
CAN.G1030.28 Capsicum annuum HOM05D006287 ORTHO05D008192 8.8e-10 69.7 48 64.6
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-09 69.3 93 44.1
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 1.5e-09 68.9 64 51.6
RcHm_v2.0_Chr7g0216401 Rosa chinensis HOM05D006287 ORTHO05D008192 1.5e-09 68.9 95 41.1
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 5.3e-07 60.5 56 53.6
Zm00001eb092390 Zea mays HOM05D006287 ORTHO05D000003 2.0e-06 58.5 94 37.2
Zm00001eb310610 Zea mays HOM05D000181 ORTHO05D000003 4.5e-06 57.4 94 36.2


User provided reference genes

Program Settings