Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 3.2e-90 335.1 173 100.0
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 3.9e-80 301.6 173 87.9
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 8.7e-80 300.4 173 87.9
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 3.4e-76 288.5 173 84.4
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 1.3e-75 286.6 173 84.4
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 1.7e-75 286.2 173 82.7
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.2e-75 285.8 173 83.2
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.2e-75 285.8 173 83.2
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 2.2e-75 285.8 173 83.2
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 4.2e-74 281.6 174 83.9
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 5.4e-74 281.2 178 83.1
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 6.0e-73 277.7 174 83.3
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 7.8e-73 277.3 173 80.9
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 7.8e-73 277.3 175 84.0
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 7.8e-73 277.3 173 82.7
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 1.0e-72 276.9 173 80.3
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 5.1e-72 274.6 173 79.8
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 5.1e-72 274.6 174 83.9
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 3.3e-71 271.9 175 81.7
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 3.3e-71 271.9 174 83.3
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 5.6e-71 271.2 174 82.2
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 5.6e-71 271.2 173 79.8
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 5.6e-71 271.2 173 79.8
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 5.6e-71 271.2 175 80.0
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 9.6e-71 270.4 174 80.5
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 1.3e-70 270.0 173 79.8
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 1.6e-70 269.6 174 78.7
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 2.8e-70 268.9 174 82.8
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.8e-70 268.9 174 82.8
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.8e-70 268.9 174 82.8
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 2.8e-70 268.9 176 79.5
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 3.6e-70 268.5 173 78.6
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 6.2e-70 267.7 173 79.8
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 6.2e-70 267.7 173 77.5
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 8.1e-70 267.3 173 82.1
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 8.1e-70 267.3 175 82.9
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.4e-69 266.5 174 82.2
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.8e-69 266.2 175 81.7
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 2.4e-69 265.8 167 85.6
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 2.4e-69 265.8 174 79.9
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 5.3e-69 264.6 174 78.2
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 2.0e-68 262.7 174 78.7
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 9.9e-68 260.4 166 82.5
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 1.3e-67 260.0 175 80.0
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 4.9e-67 258.1 175 79.4
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 8.4e-67 257.3 175 78.9
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 1.9e-66 256.1 174 77.0
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.4e-66 255.8 174 79.3
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 2.4e-66 255.8 173 74.6
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 4.2e-66 255.0 175 80.6
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 7.1e-66 254.2 173 79.2
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.2e-65 253.4 173 76.3
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 2.1e-65 252.7 174 75.9
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 3.5e-65 251.9 184 76.1
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 6.0e-65 251.1 173 75.1
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 6.0e-65 251.1 174 74.7
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 1.0e-64 250.4 173 75.1
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.3e-64 250.0 174 75.9
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 1.8e-64 249.6 173 75.1
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 2.3e-64 249.2 175 76.6
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 6.7e-64 247.7 175 78.9
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 2.5e-63 245.7 173 74.0
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 1.6e-62 243.0 176 73.9
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 3.7e-62 241.9 175 74.9
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 6.2e-62 241.1 173 74.0
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 2.0e-60 236.1 153 81.7
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 5.8e-60 234.6 175 73.7
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 5.8e-60 234.6 175 73.7
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 5.8e-60 234.6 175 73.7
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 1.0e-59 233.8 175 73.1
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-59 233.4 175 73.1
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 1.3e-59 233.4 175 73.1
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 2.2e-59 232.6 175 73.1
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 72.6
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 3.8e-59 231.9 175 72.6
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 4.9e-59 231.5 175 72.0
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 4.9e-59 231.5 168 72.6
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 6.5e-59 231.1 176 71.0
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 1.1e-58 230.3 175 72.0
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 1.1e-58 230.3 175 72.0
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 1.4e-58 229.9 176 71.0
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.5e-58 229.2 151 82.1
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 4.2e-58 228.4 175 72.0
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 7.1e-58 227.6 175 70.9
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.3e-56 223.4 153 79.1
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.3e-56 223.4 174 69.0
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 1.8e-56 223.0 138 79.7
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 1.8e-56 223.0 153 79.7
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 3.1e-53 212.2 166 68.7
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 3.4e-52 208.8 177 63.3
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 4.5e-52 208.4 169 67.5
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 5.8e-52 208.0 176 64.2
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 2.7e-49 199.1 178 57.9
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 1.3e-48 196.8 140 69.3
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 3.9e-48 195.3 175 59.4
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 7.4e-47 191.0 151 67.5
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 3.1e-45 185.7 138 77.5
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 3.4e-44 182.2 144 74.3
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 1.1e-42 177.2 137 71.5
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 1.4e-42 176.8 168 60.1
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 1.9e-42 176.4 137 71.5
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 9.4e-42 174.1 173 56.6
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 1.2e-41 173.7 117 81.2
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.1e-39 167.2 114 80.7
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 1.1e-39 167.2 171 56.1
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 7.7e-36 154.5 155 61.3
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 3.6e-33 145.6 108 74.1
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 7.9e-33 144.4 106 76.4
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 2.6e-31 139.4 112 71.4
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 3.6e-25 119.0 166 41.6
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 8.0e-25 117.9 98 73.5
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 1.8e-24 116.7 106 67.0
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 5.7e-23 111.7 101 68.3
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 6.3e-22 108.2 165 43.0
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 9.1e-21 104.4 97 64.9
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 2.2e-19 99.8 69 76.8
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 4.7e-17 92.0 100 62.0
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 6.1e-17 91.7 80 66.2
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 2.0e-15 86.7 92 63.0
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 2.2e-14 83.2 94 56.4
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 6.3e-14 81.6 122 49.2
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 8.3e-14 81.3 107 51.4
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 1.4e-13 80.5 60 73.3
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 4.1e-13 79.0 60 71.7
Sabra04G0079400 Salix brachista HOM05D005631 ORTHO05D006765 9.1e-13 77.8 80 60.0
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 1.6e-12 77.0 60 71.7
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 1.6e-12 77.0 60 70.0
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 2.0e-12 76.6 71 64.8
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 3.5e-12 75.9 61 72.1
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 5.9e-12 75.1 94 54.3
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 5.9e-12 75.1 71 56.3
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 2.9e-11 72.8 60 70.0
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 3.2e-10 69.3 81 55.6
Sabra06G0178600 Salix brachista HOM05D005631 ORTHO05D006765 4.0e-08 62.4 49 75.5
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 6.8e-08 61.6 43 79.1
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 8.8e-08 61.2 142 35.9
Sabra10G0082900 Salix brachista HOM05D005631 ORTHO05D006765 8.8e-08 61.2 50 68.0
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 2.6e-07 59.7 43 76.7
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 2.6e-07 59.7 63 58.7
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 3.4e-07 59.3 76 53.9
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 9.8e-07 57.8 43 72.1
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 1.7e-06 57.0 47 63.8
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 2.2e-06 56.6 101 44.6
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 3.7e-06 55.8 100 41.0
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 6.3e-06 55.1 100 42.0
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 8.3e-06 54.7 46 69.6


User provided reference genes

Program Settings