Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 1.7e-125 452.6 217 100.0
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.7e-94 349.0 217 77.0
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 1.0e-93 347.1 217 75.1
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 2.3e-90 335.9 217 73.3
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 5.2e-90 334.7 217 72.4
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 1.7e-88 329.7 217 69.6
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 1.7e-88 329.7 217 70.5
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 1.3e-85 320.1 212 71.2
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 2.3e-85 319.3 217 71.4
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 5.6e-84 314.7 217 68.7
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 7.3e-84 314.3 217 68.2
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 7.3e-84 314.3 217 68.2
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 9.5e-84 313.9 217 65.4
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.8e-83 312.4 217 67.7
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 8.0e-83 310.8 209 70.3
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 1.4e-82 310.1 217 67.3
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 1.8e-82 309.7 217 67.7
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 8.9e-82 307.4 204 73.0
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 8.9e-82 307.4 255 62.7
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 2.6e-81 305.8 217 69.1
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 9.8e-81 303.9 217 65.4
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 9.8e-81 303.9 217 68.2
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.7e-80 303.1 217 68.2
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 2.2e-80 302.8 217 65.0
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 3.7e-80 302.0 217 64.1
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 3.7e-80 302.0 217 67.7
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 8.3e-80 300.8 217 64.5
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 1.1e-79 300.4 222 66.7
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 5.4e-79 298.1 217 64.1
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 9.2e-79 297.4 217 64.1
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 9.2e-79 297.4 217 66.4
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.2e-78 297.0 218 64.7
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 6.0e-78 294.7 217 66.8
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 1.0e-77 293.9 217 64.5
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 1.7e-77 293.1 217 63.6
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 2.3e-77 292.7 219 63.0
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 1.9e-76 289.7 217 62.2
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 1.9e-76 289.7 223 62.8
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 2.5e-76 289.3 219 63.9
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 2.5e-76 289.3 217 62.2
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 5.6e-76 288.1 220 64.1
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 7.3e-76 287.7 217 63.6
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 9.5e-76 287.3 215 65.1
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 1.6e-75 286.6 217 64.1
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 3.6e-75 285.4 218 62.8
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 4.7e-75 285.0 217 64.1
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 4.7e-75 285.0 217 61.8
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 8.1e-75 284.3 217 63.6
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 1.4e-74 283.5 217 63.1
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 1.4e-74 283.5 219 63.0
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 1.4e-74 283.5 217 62.2
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 3.1e-74 282.3 217 63.1
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 4.0e-74 282.0 217 61.3
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 4.0e-74 282.0 198 68.7
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 4.0e-74 282.0 217 63.1
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 5.8e-73 278.1 214 62.1
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 2.2e-72 276.2 199 67.3
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 6.4e-72 274.6 202 63.9
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 6.4e-72 274.6 158 79.1
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 8.3e-72 274.2 217 64.1
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 1.9e-71 273.1 217 61.3
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 1.9e-71 273.1 180 66.1
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 2.4e-71 272.7 221 60.6
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 4.1e-71 271.9 174 69.5
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 2.7e-70 269.2 217 59.0
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.0e-69 267.3 218 61.0
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 1.3e-69 266.9 219 60.7
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 5.1e-69 265.0 217 59.0
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 6.6e-69 264.6 218 60.1
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 8.6e-69 264.2 218 61.9
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 1.1e-68 263.8 189 64.0
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 1.9e-68 263.1 217 60.4
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 4.3e-68 261.9 217 59.4
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 4.3e-68 261.9 219 59.4
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 5.6e-68 261.5 218 59.6
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 2.8e-67 259.2 218 58.3
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 8.1e-67 257.7 219 60.3
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.4e-66 256.9 220 58.2
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 2.3e-66 256.1 218 58.3
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 2.3e-66 256.1 218 57.3
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 3.1e-66 255.8 218 58.3
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 3.1e-66 255.8 218 58.3
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 4.0e-66 255.4 218 58.3
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 2.0e-65 253.1 217 59.9
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 3.4e-65 252.3 218 59.2
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 1.4e-63 246.9 216 56.0
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 1.1e-58 230.7 155 71.0
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.8e-58 229.9 217 52.1
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 5.2e-58 228.4 199 56.8
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 4.2e-55 218.8 159 64.2
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 1.9e-52 209.9 162 60.5
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 2.1e-51 206.5 223 50.7
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 4.8e-51 205.3 219 45.7
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 7.4e-44 181.4 233 42.5
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 1.1e-42 177.6 159 52.2
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.8e-42 176.8 147 61.2
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 9.0e-42 174.5 134 54.5
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 3.4e-41 172.6 143 53.8
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 2.5e-36 156.4 139 56.1
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.3e-35 154.1 155 46.5
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 5.8e-33 145.2 222 37.8
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.5e-30 136.0 82 73.2
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 1.8e-26 123.6 153 38.6
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 5.1e-21 105.5 52 84.6
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.3e-19 100.9 149 38.9
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.0e-16 91.3 56 76.8
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 7.9e-14 81.6 44 81.8
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 5.5e-07 58.9 72 41.7


User provided reference genes

Program Settings