Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 2.0e-215 752.3 414 100.0
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 7.3e-133 478.0 364 70.3
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 3.5e-127 459.1 441 61.9
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 5.0e-126 455.3 344 70.6
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.8e-124 449.5 365 65.5
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 2.9e-121 439.5 367 64.9
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 2.4e-120 436.4 345 67.8
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 2.4e-120 436.4 345 67.2
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 6.6e-118 428.3 361 64.8
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 8.6e-118 427.9 395 60.8
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.1e-117 427.6 363 64.7
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 5.6e-117 425.2 363 64.2
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 2.1e-116 423.3 362 64.4
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 2.1e-116 423.3 370 61.6
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 2.8e-116 422.9 372 63.2
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 4.7e-116 422.2 367 62.7
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 4.7e-116 422.2 366 63.9
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 1.4e-115 420.6 366 60.9
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 1.8e-115 420.2 369 61.5
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 8.9e-115 417.9 369 61.5
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 2.6e-114 416.4 366 62.8
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 5.8e-114 415.2 343 65.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 9.8e-114 414.5 368 60.6
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 2.2e-113 413.3 371 59.3
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 4.9e-113 412.1 370 60.0
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 1.9e-112 410.2 371 63.3
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 4.1e-112 409.1 370 59.2
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 4.1e-112 409.1 378 61.1
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 4.1e-112 409.1 370 59.5
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 7.1e-112 408.3 368 61.7
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 2.7e-111 406.4 363 62.5
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 2.7e-111 406.4 369 61.5
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 3.5e-111 406.0 423 56.0
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 1.0e-110 404.4 371 58.5
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 1.3e-110 404.1 348 64.4
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 1.3e-110 404.1 369 60.7
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 1.3e-110 404.1 346 65.6
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 3.0e-110 402.9 350 61.7
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 3.9e-110 402.5 372 59.4
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 8.6e-110 401.4 366 60.4
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.5e-109 400.6 360 62.2
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 2.5e-109 399.8 347 64.0
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 3.3e-109 399.4 371 58.0
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 5.6e-109 398.7 368 60.6
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 7.3e-109 398.3 348 63.2
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 1.2e-108 397.5 366 60.4
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 1.6e-108 397.1 371 59.3
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 1.6e-108 397.1 342 63.7
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 1.6e-108 397.1 366 59.8
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 8.1e-108 394.8 371 59.3
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 1.1e-107 394.4 363 60.1
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 1.1e-107 394.4 363 59.5
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.4e-107 394.0 369 58.3
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.8e-107 393.7 368 60.3
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 1.8e-107 393.7 363 59.8
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.8e-107 393.7 366 59.6
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.8e-107 393.7 366 59.3
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 3.1e-107 392.9 367 59.9
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 4.0e-107 392.5 363 59.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 4.0e-107 392.5 438 52.1
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 5.2e-107 392.1 372 58.6
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 8.9e-107 391.3 367 59.7
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 1.2e-106 391.0 363 59.2
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 1.5e-106 390.6 343 61.5
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.5e-106 390.6 343 61.5
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 2.0e-106 390.2 366 57.1
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 7.6e-106 388.3 347 61.7
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 7.6e-106 388.3 363 61.4
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 7.6e-106 388.3 374 58.8
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 9.9e-106 387.9 363 60.9
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 9.9e-106 387.9 336 62.5
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.3e-105 387.5 347 61.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.7e-105 387.1 357 59.7
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.7e-105 387.1 363 60.9
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 6.4e-105 385.2 371 58.5
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 3.2e-104 382.9 374 58.8
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.1e-104 382.5 351 59.8
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 4.1e-104 382.5 350 58.9
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 7.1e-104 381.7 342 59.9
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 7.1e-104 381.7 369 57.7
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 9.2e-104 381.3 328 61.6
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 7.8e-103 378.3 369 58.0
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 7.8e-103 378.3 367 57.5
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 1.7e-102 377.1 372 57.0
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.3e-101 372.9 361 56.2
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.1e-100 370.2 337 61.7
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 2.4e-99 366.7 362 55.0
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 3.1e-99 366.3 375 56.0
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 1.2e-98 364.4 311 65.0
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 3.8e-97 359.4 336 58.0
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.3e-94 350.9 370 54.6
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 2.1e-87 327.0 301 61.1
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 3.3e-85 319.7 346 54.3
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 9.9e-82 308.1 418 46.4
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.9e-77 293.9 211 72.0
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 2.1e-76 290.4 363 46.8
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 2.8e-76 290.0 319 53.9
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 2.6e-74 283.5 357 46.2
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 5.5e-72 275.8 203 70.9
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 7.1e-72 275.4 241 63.1
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 7.9e-71 271.9 262 59.2
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 5.3e-67 259.2 203 68.0
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 6.1e-55 219.2 343 41.7
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 1.5e-53 214.5 345 40.0
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 1.7e-52 211.1 340 37.1
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 6.5e-49 199.1 342 39.2
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 4.1e-43 179.9 223 46.6
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 2.7e-34 150.6 142 57.0
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 2.7e-26 124.0 82 74.4
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 5.9e-26 122.9 150 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.6e-18 98.2 104 48.1
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 1.5e-16 91.7 234 30.3
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 2.5e-16 90.9 150 44.7
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 1.2e-13 82.0 118 44.1
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 6.4e-12 76.3 75 53.3
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 5.9e-10 69.7 121 34.7
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 7.8e-10 69.3 74 54.1
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 2.3e-06 57.8 345 24.3


User provided reference genes

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