Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 4.2e-286 987.3 478 100.0
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 7.1e-257 890.2 478 88.5
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.4e-252 875.9 480 87.7
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.4e-252 875.9 480 87.7
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.0e-251 872.1 479 86.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 9.9e-251 869.8 478 85.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.8e-250 867.8 479 85.6
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.4e-249 865.9 480 84.6
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.9e-249 865.5 478 85.1
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 7.1e-249 863.6 479 85.4
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.1e-249 863.6 480 85.2
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 2.7e-248 861.7 476 85.7
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 6.0e-248 860.5 481 86.1
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.0e-248 860.5 478 85.6
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.0e-247 859.8 476 85.3
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.7e-247 859.0 479 84.8
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 3.0e-247 858.2 478 84.9
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.9e-246 855.5 478 84.5
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 4.3e-246 854.4 479 83.9
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.3e-245 852.8 476 85.3
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.6e-245 851.3 475 84.4
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 3.6e-245 851.3 479 84.1
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 4.8e-245 850.9 475 84.6
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 8.1e-245 850.1 485 83.3
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.1e-244 849.7 475 84.2
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.8e-244 849.0 478 82.8
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.8e-244 849.0 478 83.5
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.1e-244 848.2 479 83.9
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 3.1e-244 848.2 479 83.7
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.3e-244 847.4 485 83.3
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.2e-243 846.3 479 84.3
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 2.0e-243 845.5 475 83.8
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.0e-243 845.5 478 83.5
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.6e-243 845.1 477 83.0
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 4.4e-243 844.3 478 83.1
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.8e-243 844.0 474 84.2
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 5.8e-243 844.0 479 84.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 5.8e-243 844.0 478 82.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 9.9e-243 843.2 479 83.9
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.3e-242 842.8 475 82.5
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.3e-242 842.8 478 83.9
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.7e-242 842.4 483 82.2
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 2.2e-242 842.0 478 83.3
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.9e-242 841.6 475 82.9
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 3.8e-242 841.3 478 82.8
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.9e-242 840.9 475 82.7
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 8.4e-242 840.1 478 82.8
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 4.2e-241 837.8 479 82.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.2e-241 837.8 482 82.6
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.2e-240 836.3 486 82.1
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.6e-240 834.3 459 85.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 7.8e-240 833.6 478 81.4
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 7.8e-240 833.6 479 82.5
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 7.8e-240 833.6 479 83.5
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.3e-239 832.8 479 83.9
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.3e-239 832.0 441 88.7
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 3.9e-239 831.2 479 82.7
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.1e-238 829.7 441 88.2
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 3.3e-238 828.2 478 80.5
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.3e-238 828.2 479 81.8
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 9.6e-238 826.6 478 84.5
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.6e-237 825.9 478 81.2
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 2.1e-237 825.5 472 82.4
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 6.2e-237 823.9 479 82.7
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.1e-236 823.2 479 80.6
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.1e-236 823.2 494 79.4
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.4e-236 822.8 476 83.0
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 2.4e-236 822.0 479 81.6
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 6.9e-236 820.5 480 81.7
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 82.7
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.2e-235 819.7 476 82.6
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.5e-235 819.3 478 80.8
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.0e-235 818.9 479 81.6
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 5.8e-235 817.4 479 80.8
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 7.6e-235 817.0 471 81.5
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.3e-234 816.2 472 81.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.7e-234 815.8 472 82.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.9e-234 814.3 471 81.3
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 4.9e-234 814.3 476 81.1
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 8.4e-234 813.5 478 80.1
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.1e-233 813.1 479 80.6
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.9e-233 812.4 479 80.4
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 1.9e-233 812.4 475 81.3
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 2.4e-233 812.0 479 80.0
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.4e-233 812.0 479 80.0
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 4.2e-233 811.2 478 79.7
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 3.5e-232 808.1 480 80.4
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.8e-231 805.8 471 80.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.8e-231 805.8 475 80.6
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.0e-231 805.1 487 79.1
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.5e-230 802.0 476 79.6
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.3e-230 801.6 478 79.5
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.6e-229 799.3 481 79.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.2e-227 793.1 455 80.9
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.5e-227 792.7 481 79.6
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.5e-227 791.2 491 78.2
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 7.6e-227 790.4 456 80.5
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.6e-224 782.7 504 77.0
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.5e-219 766.1 480 76.9
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.3e-218 763.1 475 76.2
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 7.1e-217 757.3 459 79.1
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.0e-215 753.4 499 74.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.9e-215 751.5 506 73.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 8.2e-213 743.8 479 75.6
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.1e-212 743.4 498 74.3
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 9.0e-212 740.3 479 75.4
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.6e-208 729.6 480 74.6
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 3.6e-208 728.4 383 88.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 2.5e-201 705.7 448 73.9
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 4.2e-201 704.9 469 71.2
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.6e-200 703.0 477 70.4
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 7.9e-200 700.7 444 74.5
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 3.8e-194 681.8 482 71.2
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 9.1e-188 660.6 464 72.2
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.0e-176 620.9 366 77.6
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 9.8e-174 614.0 367 77.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.4e-172 609.4 457 66.7
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.7e-165 586.6 480 62.9
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.7e-152 542.0 419 67.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 4.3e-145 518.8 304 78.9
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-141 506.9 281 85.4
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 3.7e-141 505.8 275 86.9
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 7.8e-139 498.0 408 61.0
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.3e-138 497.3 304 77.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 3.1e-135 486.1 481 50.7
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 2.5e-129 466.5 307 74.6
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.0e-123 445.3 308 70.1
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.4e-103 380.9 211 85.8
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.4e-102 376.3 246 72.4
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.1e-99 367.1 228 76.8
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.1e-99 367.1 228 76.8
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.0e-93 348.2 417 47.2
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 4.8e-88 329.3 200 79.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 2.4e-87 327.0 464 44.0
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.4e-74 284.6 148 85.8
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.5e-73 281.2 428 41.6
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.2e-67 261.5 180 67.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 8.0e-67 258.8 180 67.2
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.3e-64 251.5 177 67.8
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.1e-63 248.4 177 67.2
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.7e-48 196.8 110 80.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 3.7e-48 196.8 110 80.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 9.5e-44 182.2 111 77.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 5.0e-37 159.8 97 76.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.5e-36 158.3 105 71.4
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.1e-35 152.5 95 80.0
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.1e-31 142.1 81 76.5
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 6.6e-29 132.9 86 74.4
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 5.6e-28 129.8 77 76.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 5.1e-21 106.7 135 43.0
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 9.6e-20 102.4 56 78.6
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.1e-19 101.3 65 70.8
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 7.1e-15 86.3 46 82.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.6e-14 85.1 46 87.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.7e-14 84.3 72 61.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.7e-14 84.3 72 61.1
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 2.3e-13 81.3 64 67.2
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.8e-11 73.6 70 44.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 3.1e-10 70.9 34 88.2
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 3.8e-08 63.9 58 55.2
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 6.4e-08 63.2 37 81.1
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 1.6e-06 58.5 40 65.0
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 6.0e-06 56.6 56 48.2
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 6.0e-06 56.6 56 48.2
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 6.0e-06 56.6 56 48.2


User provided reference genes

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