Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 3.3e-33 144.8 95 100.0
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 7.5e-25 117.1 98 86.7
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 9.4e-20 100.1 96 62.5
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 8.0e-19 97.1 96 63.5
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.8e-18 94.0 95 73.7
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.6e-17 92.0 116 55.2
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.4e-17 91.7 108 67.6
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.4e-17 91.7 108 67.6
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.4e-17 91.7 108 67.6
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 7.5e-17 90.5 106 67.0
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-17 90.1 112 62.5
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 9.8e-17 90.1 112 62.5
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 9.8e-17 90.1 99 57.6
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 1.3e-16 89.7 109 67.0
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 1.7e-16 89.4 116 51.7
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.7e-16 89.4 108 58.3
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 2.2e-16 89.0 112 58.9
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 2.2e-16 89.0 112 58.9
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 2.8e-16 88.6 119 60.5
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.7e-16 88.2 110 56.4
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 8.3e-16 87.0 107 70.1
Prupe.6G072200 Prunus persica HOM05D001415 ORTHO05D001075 9.1e-15 83.6 103 69.9
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 2.7e-14 82.0 112 57.1
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 2.7e-14 82.0 99 69.7
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 2.7e-14 82.0 99 72.7
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 4.5e-14 81.3 116 56.0
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 1.7e-13 79.3 104 58.7
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 1.7e-13 79.3 104 58.7
Sp4g11940 Schrenkiella parvula HOM05D008503 ORTHO05D001075 2.3e-13 79.0 119 58.0
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.9e-13 78.6 110 62.7
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 3.8e-13 78.2 102 66.7
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.0e-13 77.8 113 56.6
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 8.6e-13 77.0 99 65.7
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 1.1e-12 76.6 104 51.0
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 1.9e-12 75.9 109 49.5
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 3.2e-12 75.1 105 61.9
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 3.2e-12 75.1 89 56.2
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 4.2e-12 74.7 107 60.7
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 2.8e-11 72.0 94 51.1
Phvul.L007243 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.8e-11 72.0 102 71.6
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 4.7e-11 71.2 105 49.5
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 4.7e-11 71.2 106 48.1
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 6.1e-11 70.9 102 57.8
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.0e-10 70.1 111 45.9
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 1.8e-10 69.3 106 48.1
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.3e-10 68.9 125 50.4
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.0e-10 68.2 94 46.8
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 4.0e-10 68.2 106 50.9
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 4.0e-10 68.2 96 54.2
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 4.0e-10 68.2 94 47.9
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.0e-10 68.2 104 56.7
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 5.2e-10 67.8 125 49.6
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.8e-10 67.4 95 46.3
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 6.8e-10 67.4 95 46.3
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 6.8e-10 67.4 112 44.6
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 8.8e-10 67.0 111 45.9
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.2e-09 66.6 94 46.8
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 1.5e-09 66.2 94 45.7
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.5e-09 66.2 94 47.9
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 1.5e-09 66.2 31 96.8
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 2.0e-09 65.9 94 45.7
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 2.0e-09 65.9 97 59.8
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.0e-09 65.9 94 44.7
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 2.0e-09 65.9 31 93.5
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 2.6e-09 65.5 94 45.7
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.6e-09 65.5 122 43.4
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.6e-09 65.5 94 45.7
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.6e-09 65.5 94 45.7
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 3.4e-09 65.1 95 45.3
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 3.4e-09 65.1 94 45.7
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.4e-09 65.1 94 44.7
MD11G1096600 Malus domestica HOM05D001415 ORTHO05D001075 3.4e-09 65.1 97 67.0
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.4e-09 65.1 94 46.8
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 4.4e-09 64.7 122 42.6
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.7e-09 64.3 64 57.8
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.7e-09 64.3 64 57.8
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.7e-09 64.3 64 57.8
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.7e-09 64.3 94 45.7
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 7.5e-09 63.9 94 44.7
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 7.5e-09 63.9 29 96.6
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 9.8e-09 63.5 94 44.7
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 9.8e-09 63.5 106 50.9
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.3e-08 63.2 94 43.6
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 1.3e-08 63.2 132 38.6
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 1.3e-08 63.2 109 50.5
THA.LOC104815782 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 1.3e-08 63.2 106 49.1
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.7e-08 62.8 31 87.1
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.7e-08 62.8 94 43.6
DCAR_005958 Daucus carota HOM05D001415 ORTHO05D001075 2.2e-08 62.4 115 53.0
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 2.2e-08 62.4 95 45.3
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 3.7e-08 61.6 108 55.6
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 3.7e-08 61.6 29 89.7
Ah.15g098480 Amaranthus hybridus HOM05D001415 ORTHO05D001075 4.9e-08 61.2 125 41.6
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 6.3e-08 60.8 95 46.3
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 6.3e-08 60.8 94 43.6
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 8.3e-08 60.5 97 46.4
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 8.3e-08 60.5 96 46.9
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 8.3e-08 60.5 27 96.3
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.1e-07 60.1 94 44.7
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-07 60.1 95 41.1
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-07 60.1 94 43.6
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 1.1e-07 60.1 110 41.8
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 1.1e-07 60.1 94 44.7
Ah.08g219870 Amaranthus hybridus HOM05D001415 ORTHO05D001075 1.4e-07 59.7 118 41.5
Glyma.11G137600 Glycine max HOM05D001415 ORTHO05D001075 1.4e-07 59.7 104 62.5
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.4e-07 59.7 94 42.6
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 1.8e-07 59.3 94 46.8
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 1.8e-07 59.3 95 42.1
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 1.8e-07 59.3 94 46.8
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 2.4e-07 58.9 127 48.0
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 2.4e-07 58.9 94 43.6
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.1e-07 58.5 101 55.4
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.1e-07 58.5 95 43.2
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 3.1e-07 58.5 92 45.7
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 4.1e-07 58.2 94 44.7
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 5.4e-07 57.8 105 45.7
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 5.4e-07 57.8 72 44.4
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 5.4e-07 57.8 109 46.8
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 5.4e-07 57.8 109 49.5
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 5.4e-07 57.8 93 43.0
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 7.0e-07 57.4 108 40.7
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 7.0e-07 57.4 108 40.7
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 7.0e-07 57.4 108 40.7
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 7.0e-07 57.4 108 52.8
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.0e-07 57.4 94 44.7
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 7.0e-07 57.4 104 51.0
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 7.0e-07 57.4 104 51.0
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 7.0e-07 57.4 95 42.1
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 9.2e-07 57.0 88 45.5
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 9.2e-07 57.0 88 45.5
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 9.2e-07 57.0 107 50.5
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 9.2e-07 57.0 94 43.6
CARHR007270 Cardamine hirsuta HOM05D008503 ORTHO05D001075 9.2e-07 57.0 92 47.8
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 9.2e-07 57.0 88 45.5
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 9.2e-07 57.0 95 43.2
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 9.2e-07 57.0 95 43.2
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.2e-06 56.6 140 35.7
CARHR155200 Cardamine hirsuta HOM05D008503 ORTHO05D001075 1.2e-06 56.6 76 51.3
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 1.2e-06 56.6 95 43.2
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 1.2e-06 56.6 94 41.5
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.6e-06 56.2 95 44.2
BcaC07g41995 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-06 55.8 107 52.3
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 2.0e-06 55.8 106 46.2
C01p33250 Brassica napus HOM05D008503 ORTHO05D001075 2.0e-06 55.8 87 43.7
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 2.0e-06 55.8 106 46.2
C08p50550 Brassica napus HOM05D001415 ORTHO05D001075 2.0e-06 55.8 107 52.3
BolC8t52582H Brassica oleracea HOM05D001415 ORTHO05D001075 2.0e-06 55.8 107 52.3
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 2.0e-06 55.8 106 46.2
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 2.0e-06 55.8 88 44.3
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.0e-06 55.8 94 45.7
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 2.7e-06 55.5 109 41.3
A10p06020 Brassica napus HOM05D001415 ORTHO05D001075 3.5e-06 55.1 104 53.8
BraA10t42864Z Brassica rapa HOM05D001415 ORTHO05D001075 3.5e-06 55.1 104 53.8
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 3.5e-06 55.1 95 42.1
Thhalv10014947m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 3.5e-06 55.1 71 45.1
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 4.5e-06 54.7 69 44.9
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 4.5e-06 54.7 29 75.9
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 4.5e-06 54.7 29 75.9
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 4.5e-06 54.7 94 42.6
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 4.5e-06 54.7 29 75.9
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 4.5e-06 54.7 87 44.8
SalBow3G1548 Salvia bowleyana HOM05D001415 ORTHO05D001075 4.5e-06 54.7 95 42.1
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 5.9e-06 54.3 31 71.0
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 7.8e-06 53.9 140 34.3
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 7.8e-06 53.9 140 34.3
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 7.8e-06 53.9 92 41.3


User provided reference genes

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