Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 8.7e-176 620.2 304 100.0
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 5.6e-159 564.3 303 88.8
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 1.2e-156 556.6 304 86.2
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 4.5e-156 554.7 304 86.5
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 7.6e-156 553.9 304 86.5
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 7.6e-156 553.9 304 86.5
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 1.3e-155 553.1 303 87.1
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 1.4e-154 549.7 304 85.5
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 7.1e-154 547.4 303 86.5
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 7.1e-154 547.4 299 87.3
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 9.3e-154 547.0 302 85.4
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 9.3e-154 547.0 303 84.8
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 4.6e-153 544.7 304 84.5
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 3.0e-152 542.0 303 84.5
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 8.7e-152 540.4 303 86.5
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 1.1e-151 540.0 304 84.5
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 4.3e-151 538.1 303 83.8
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 9.7e-151 537.0 298 85.2
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.3e-150 536.6 303 83.8
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 6.3e-150 534.3 303 83.2
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 8.2e-150 533.9 298 84.9
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 1.8e-149 532.7 303 82.2
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 2.4e-149 532.3 298 83.9
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 4.1e-149 531.6 295 85.1
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 4.1e-149 531.6 298 84.6
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 4.1e-149 531.6 303 82.8
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 5.3e-149 531.2 296 84.5
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 1.2e-148 530.0 303 83.5
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 2.6e-148 528.9 296 82.8
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 3.4e-148 528.5 299 83.3
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 5.9e-148 527.7 325 79.4
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 1.0e-147 526.9 303 81.8
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.7e-147 526.2 303 82.8
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.7e-147 526.2 303 82.8
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 2.9e-147 525.4 306 82.4
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 3.8e-147 525.0 298 83.6
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 5.0e-147 524.6 303 82.5
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 8.5e-147 523.9 299 81.6
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 1.1e-146 523.5 297 81.8
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 1.1e-146 523.5 303 82.2
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.5e-146 522.3 303 82.2
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 2.5e-146 522.3 297 83.5
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 7.2e-146 520.8 304 82.6
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 2.1e-145 519.2 303 81.5
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 2.1e-145 519.2 314 79.3
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 8.8e-144 513.8 322 78.9
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 1.1e-143 513.5 300 80.7
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 1.7e-142 509.6 298 81.2
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 2.2e-142 509.2 304 79.9
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 6.3e-142 507.7 304 78.6
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 8.2e-142 507.3 298 80.9
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 8.2e-142 507.3 299 82.6
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.8e-141 506.1 286 83.9
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 1.2e-140 503.4 279 85.7
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 1.7e-139 499.6 304 78.0
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 5.0e-139 498.0 311 77.2
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 1.1e-138 496.9 295 79.0
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.4e-138 496.5 295 79.0
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 3.2e-138 495.4 295 78.3
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 1.6e-137 493.0 300 77.3
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 2.1e-137 492.7 295 79.0
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 2.7e-137 492.3 295 79.0
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 3.6e-137 491.9 304 75.3
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 4.7e-137 491.5 297 77.4
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 4.7e-137 491.5 292 79.5
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 7.9e-137 490.7 295 78.0
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 1.0e-136 490.3 295 78.6
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 1.0e-136 490.3 293 78.8
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 1.8e-136 489.6 351 68.9
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 2.3e-136 489.2 295 78.3
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 2.3e-136 489.2 295 78.3
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.1e-135 486.9 304 74.3
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 1.1e-135 486.9 295 78.3
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 1.1e-135 486.9 295 78.3
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 2.6e-135 485.7 296 78.7
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 1.7e-134 483.0 304 76.6
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 1.7e-134 483.0 295 78.0
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 2.2e-134 482.6 292 78.4
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 2.8e-134 482.3 296 77.0
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 1.4e-133 479.9 264 85.2
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 4.1e-133 478.4 299 78.6
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 7.0e-133 477.6 295 75.9
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 1.7e-131 473.0 320 72.2
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.1e-130 470.3 295 75.3
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 1.5e-130 469.9 336 71.7
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 3.2e-130 468.8 298 72.8
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 2.0e-127 459.5 291 73.9
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 7.4e-127 457.6 302 74.8
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 1.7e-126 456.4 296 73.6
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 2.6e-124 449.1 298 71.5
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 5.0e-123 444.9 265 78.5
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 8.5e-123 444.1 304 72.4
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 3.8e-115 418.7 297 68.4
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 5.9e-108 394.8 221 82.8
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 3.0e-104 382.5 290 62.8
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 2.6e-103 379.4 199 91.0
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 2.4e-101 372.9 286 62.6
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 1.6e-100 370.2 291 64.6
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 5.8e-95 351.7 287 60.3
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 1.1e-93 347.4 200 79.0
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 2.3e-88 329.7 199 78.4
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 4.4e-79 298.9 184 76.6
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.2e-76 290.8 167 83.2
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 2.6e-71 273.1 263 52.1
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 1.5e-66 257.3 153 77.8
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 7.6e-63 245.0 145 77.2
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 5.3e-56 222.2 144 77.1
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 4.2e-53 212.6 152 67.8
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 2.5e-42 176.8 110 75.5
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 6.9e-40 168.7 101 77.2
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 5.3e-32 142.5 118 64.4
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.5e-31 141.0 79 84.8
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 6.5e-30 135.6 77 81.8
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 8.8e-27 125.2 73 80.8
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 1.5e-26 124.4 337 26.7
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 7.4e-26 122.1 72 80.6
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 1.8e-24 117.5 324 28.4
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 2.0e-23 114.0 308 26.0
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 6.1e-12 75.9 41 87.8


User provided reference genes

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