Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.1e-157 559.3 345 100.0
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.8e-137 493.0 345 78.8
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 6.3e-130 468.0 345 74.5
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.8e-127 458.8 345 73.6
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 6.5e-127 458.0 345 72.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.4e-126 456.8 345 72.2
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.5e-126 456.1 345 73.3
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.2e-125 453.8 346 72.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.6e-125 453.4 345 78.8
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 4.6e-125 451.8 345 72.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.8e-124 449.9 345 71.6
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 5.7e-123 444.9 345 70.7
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.7e-123 444.9 342 72.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.4e-123 444.5 345 70.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.3e-122 443.7 345 70.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.8e-122 441.8 345 70.1
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.3e-122 441.4 345 70.1
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 8.2e-122 441.0 371 68.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.1e-121 440.7 335 71.9
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.1e-121 440.7 345 70.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.1e-121 440.7 344 70.3
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.1e-121 439.1 341 70.7
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.1e-121 439.1 342 71.9
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.1e-121 438.7 345 69.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.9e-121 438.0 341 70.4
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 9.1e-121 437.6 345 69.6
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 3.4e-120 435.6 345 73.3
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 4.5e-120 435.3 345 68.7
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 7.7e-120 434.5 335 71.0
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 7.7e-120 434.5 345 68.4
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.0e-119 434.1 345 68.7
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 3.8e-119 432.2 347 69.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 5.0e-119 431.8 345 68.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.0e-119 431.8 345 78.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 8.5e-119 431.0 337 69.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.4e-118 430.3 345 79.7
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.4e-118 430.3 345 73.3
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.9e-118 429.9 345 68.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.5e-118 429.5 345 73.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 67.8
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 68.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.6e-117 425.2 345 67.5
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.1e-117 424.9 342 69.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.4e-116 423.7 343 73.5
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.3e-116 422.9 345 67.8
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 5.1e-116 421.8 345 67.2
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 8.8e-116 421.0 345 66.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.1e-115 420.6 343 69.7
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 9.7e-115 417.5 335 68.4
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.7e-114 416.8 345 66.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.2e-114 416.4 345 71.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.4e-113 413.7 345 72.8
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.4e-113 413.7 341 74.2
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.1e-113 412.5 345 65.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.9e-113 411.4 343 66.5
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 9.1e-113 411.0 345 65.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.0e-112 409.8 345 65.5
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.0e-111 407.5 319 71.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.3e-111 407.1 342 66.1
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.3e-111 407.1 345 64.9
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 2.9e-111 406.0 319 76.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.0e-111 405.2 345 70.4
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.0e-111 405.2 315 69.5
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 6.5e-111 404.8 345 64.6
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.5e-110 402.9 345 69.9
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 2.5e-110 402.9 345 64.9
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.2e-110 401.4 345 68.7
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.3e-108 396.4 345 70.4
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 5.2e-108 395.2 345 74.8
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.1e-107 394.0 345 63.5
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.5e-107 393.7 394 58.9
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.6e-107 392.9 345 70.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.4e-107 392.1 269 76.2
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 9.7e-107 391.0 345 70.1
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 8.2e-106 387.9 345 64.6
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 7.0e-105 384.8 345 72.5
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 2.0e-104 383.3 342 62.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 4.5e-104 382.1 337 69.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.1e-102 377.5 328 63.4
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 3.2e-102 375.9 342 62.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.7e-101 372.9 345 66.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.1e-101 371.7 341 64.8
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 8.0e-101 371.3 345 71.6
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 5.2e-100 368.6 331 63.1
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 9.7e-99 364.4 345 60.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.2e-98 363.2 346 60.4
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.2e-98 363.2 345 60.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.8e-98 362.8 345 71.6
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.8e-97 360.1 269 71.7
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-96 356.7 269 69.5
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.9e-95 352.8 345 66.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.9e-95 352.8 345 66.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 4.2e-94 349.0 345 63.2
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 2.1e-93 346.7 243 74.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 3.0e-92 342.8 346 59.2
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.2e-92 342.0 373 55.8
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.8e-92 341.7 338 65.1
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 8.8e-92 341.3 345 62.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.7e-91 338.6 347 55.9
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.4e-89 334.0 366 61.2
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.4e-89 334.0 345 62.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 9.1e-89 331.3 346 66.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 5.0e-87 325.5 345 60.9
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.8e-85 319.7 345 53.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 3.4e-83 312.8 333 54.7
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.4e-83 312.8 348 53.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.3e-82 310.8 270 65.6
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 4.1e-81 305.8 347 59.7
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.8e-80 301.6 350 52.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.3e-79 300.8 349 52.7
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.9e-79 299.7 319 56.7
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 5.0e-79 298.9 323 53.6
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.6e-77 293.9 343 52.2
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.8e-77 293.1 345 59.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 3.6e-77 292.7 348 51.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.8e-76 290.4 345 53.9
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.5e-75 287.3 345 61.7
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.3e-74 284.3 334 52.7
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-73 280.8 350 51.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.4e-73 280.8 350 51.1
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-73 280.0 350 50.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.2e-73 279.6 345 52.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-72 276.9 350 50.3
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.6e-72 275.8 346 51.2
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.6e-71 271.9 321 52.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 7.3e-70 268.5 265 60.8
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.2e-69 267.7 348 49.1
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.8e-69 266.5 256 61.3
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.1e-68 264.6 329 49.2
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 8.9e-68 261.5 346 49.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.3e-63 246.9 346 46.5
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.8e-61 240.0 346 45.7
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.7e-61 239.2 304 50.7
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.1e-61 238.4 343 47.5
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.2e-60 235.7 345 42.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-59 234.6 328 46.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.9e-58 229.9 341 45.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.4e-57 226.9 274 51.5
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.4e-57 226.9 344 43.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 7.8e-56 221.9 343 44.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-55 221.1 285 50.2
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.3e-55 220.3 341 44.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.8e-53 213.4 303 47.2
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 6.2e-53 212.2 313 45.7
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.8e-52 210.7 270 49.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-52 210.3 285 48.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 8.9e-52 208.4 342 36.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 8.9e-52 208.4 359 47.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-50 203.8 289 44.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.8e-50 203.0 354 46.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 6.4e-50 202.2 340 40.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.4e-50 201.8 199 60.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.3e-47 193.7 185 56.8
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.1e-45 187.2 345 35.4
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-43 181.4 341 37.5
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.2e-43 181.4 290 41.0
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 7.6e-43 178.7 237 47.3
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.6e-39 165.6 215 49.3
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.4e-36 157.9 138 67.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.4e-34 149.1 158 70.3
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.1e-32 144.1 131 61.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.0e-27 127.5 152 52.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.9e-26 122.9 304 35.2
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.3e-23 114.8 321 34.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.1e-20 105.1 172 57.0
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.2e-18 97.4 281 31.3
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 5.1e-15 86.3 238 31.9
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 5.1e-15 86.3 238 31.9
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 6.7e-15 85.9 292 41.1
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.8e-13 80.5 292 29.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.5e-09 67.4 127 40.9
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.6e-08 64.7 111 41.4
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.7e-08 63.9 37 86.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.3e-06 56.6 36 75.0


User provided reference genes

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